RNA 3D Hub //

Motif IL_15861.8 Version IL_15861.8 of this group appears in releases 3.87 to 3.87

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 101-81-105-65-78-9
1 IL_6CZR_1326CZR0.29540SSU/LSU pseudoknot1a SSU rRNAC488G489G490C491C492A493A494C495*G524G525ncSHcWWncSHcWW
2 IL_4LFB_0204LFB0.21340SSU/LSU pseudoknotA SSU rRNAC504G505G506C507C508A509A510C511*G540G541cWWcSHcWW
3 IL_5J7L_0245J7L0.18710SSU/LSU pseudoknotAA SSU rRNAC504G505G506C507U508A509A510C511*G540G541cWWncSHntSWcWW
4 IL_4V88_4134V880.23460SSU/LSU pseudoknotA6 SSU rRNAA550G551G552G553C554A555A556G557*C587U588cWWcSHcWW
5 IL_8C3A_4238C3A0.21530SSU/LSU pseudoknotCM SSU rRNAA548G549G550G551C552A553A554G555*C585U586cWWncSHcWW
6 IL_5TBW_0495TBW0.11800SSU/LSU pseudoknot1 LSU rRNAU1173G1174C1175C1176G1177G1178A1179A1180*U1325A1326cWWchHcWW
7 IL_8C3A_0528C3A0.00000SSU/LSU pseudoknot1 LSU rRNAU1169G1170C1171C1172G1173G1174A1175A1176*U1321A1322cWWnchHcWW
8 IL_4V9F_0384V9F0.13350SSU/LSU pseudoknot0 LSU rRNAU1101C1102C1103C1104C1105A1106A1107G1108*C1254A1255cWWcSHcWW
9 IL_8VTW_0368VTW0.14730SSU/LSU pseudoknot (H)1A LSU rRNAC1004C1005C1006C1007C1008A1009A1010G1011*C1150G1151cWWcSHcWW
10 IL_4WF9_0374WF90.23270SSU/LSU pseudoknotX LSU rRNAU1048C1049C1050C1051A1052A1053A1054A1055*U1194A1195cWWncSHcWW
11 IL_5J7L_2785J7L0.23140SSU/LSU pseudoknotDA LSU rRNAU1004C1005C1006C1007A1008A1009A1010G1011*C1150A1151cWWcSHcWW
12 IL_7A0S_0347A0S0.25280SSU/LSU pseudoknotX LSU rRNAU1015C1016C1017C1018U1019A1020A1021A1022*U1161A1162cWWncSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGGCCAAC*GG2
AGGGCAAG*CU2
UGCCGGAA*UA2
CGGCUAAC*GG1
UCCCCAAG*CA1
CCCCCAAG*CG1
UCCCAAAA*UA1
UCCCAAAG*CA1
UCCCUAAA*UA1
Non-Watson-Crick part of the motif
SequenceCounts
GGCCAA*2
GGGCAA*2
GCCGGA*2
CCCCAA*2
CCCAAA*2
GGCUAA*1
CCCUAA*1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • SSU/LSU pseudoknot (11)
  • SSU/LSU pseudoknot (H) (1)
    • Basepair signature
    cWW-L-cWW-L-L-R-cSH
    Heat map statistics
    Min 0.07 | Avg 0.20 | Max 0.36
    Help

    Coloring options:

    IL_6CZR_132:IL_6CZR_132 = 0IL_6CZR_132:IL_4LFB_020 = 0.143IL_6CZR_132:IL_5J7L_024 = 0.175IL_6CZR_132:IL_4V88_413 = 0.1992IL_6CZR_132:IL_8C3A_423 = 0.225IL_6CZR_132:IL_5TBW_049 = 0.2605IL_6CZR_132:IL_8C3A_052 = 0.2954IL_6CZR_132:IL_4V9F_038 = 0.3309IL_6CZR_132:IL_8VTW_036 = 0.3152IL_6CZR_132:IL_4WF9_037 = 0.3601IL_6CZR_132:IL_5J7L_278 = 0.3556IL_6CZR_132:IL_7A0S_034 = 0.31IL_4LFB_020:IL_6CZR_132 = 0.143IL_4LFB_020:IL_4LFB_020 = 0IL_4LFB_020:IL_5J7L_024 = 0.0671IL_4LFB_020:IL_4V88_413 = 0.13IL_4LFB_020:IL_8C3A_423 = 0.1557IL_4LFB_020:IL_5TBW_049 = 0.1851IL_4LFB_020:IL_8C3A_052 = 0.2134IL_4LFB_020:IL_4V9F_038 = 0.2458IL_4LFB_020:IL_8VTW_036 = 0.2469IL_4LFB_020:IL_4WF9_037 = 0.3178IL_4LFB_020:IL_5J7L_278 = 0.3064IL_4LFB_020:IL_7A0S_034 = 0.27IL_5J7L_024:IL_6CZR_132 = 0.175IL_5J7L_024:IL_4LFB_020 = 0.0671IL_5J7L_024:IL_5J7L_024 = 0IL_5J7L_024:IL_4V88_413 = 0.1349IL_5J7L_024:IL_8C3A_423 = 0.1508IL_5J7L_024:IL_5TBW_049 = 0.1605IL_5J7L_024:IL_8C3A_052 = 0.1871IL_5J7L_024:IL_4V9F_038 = 0.2104IL_5J7L_024:IL_8VTW_036 = 0.2302IL_5J7L_024:IL_4WF9_037 = 0.3181IL_5J7L_024:IL_5J7L_278 = 0.3013IL_5J7L_024:IL_7A0S_034 = 0.2723IL_4V88_413:IL_6CZR_132 = 0.1992IL_4V88_413:IL_4LFB_020 = 0.13IL_4V88_413:IL_5J7L_024 = 0.1349IL_4V88_413:IL_4V88_413 = 0IL_4V88_413:IL_8C3A_423 = 0.0894IL_4V88_413:IL_5TBW_049 = 0.1977IL_4V88_413:IL_8C3A_052 = 0.2346IL_4V88_413:IL_4V9F_038 = 0.252IL_4V88_413:IL_8VTW_036 = 0.2555IL_4V88_413:IL_4WF9_037 = 0.3206IL_4V88_413:IL_5J7L_278 = 0.3038IL_4V88_413:IL_7A0S_034 = 0.2738IL_8C3A_423:IL_6CZR_132 = 0.225IL_8C3A_423:IL_4LFB_020 = 0.1557IL_8C3A_423:IL_5J7L_024 = 0.1508IL_8C3A_423:IL_4V88_413 = 0.0894IL_8C3A_423:IL_8C3A_423 = 0IL_8C3A_423:IL_5TBW_049 = 0.1945IL_8C3A_423:IL_8C3A_052 = 0.2153IL_8C3A_423:IL_4V9F_038 = 0.2344IL_8C3A_423:IL_8VTW_036 = 0.238IL_8C3A_423:IL_4WF9_037 = 0.3089IL_8C3A_423:IL_5J7L_278 = 0.2965IL_8C3A_423:IL_7A0S_034 = 0.2737IL_5TBW_049:IL_6CZR_132 = 0.2605IL_5TBW_049:IL_4LFB_020 = 0.1851IL_5TBW_049:IL_5J7L_024 = 0.1605IL_5TBW_049:IL_4V88_413 = 0.1977IL_5TBW_049:IL_8C3A_423 = 0.1945IL_5TBW_049:IL_5TBW_049 = 0IL_5TBW_049:IL_8C3A_052 = 0.118IL_5TBW_049:IL_4V9F_038 = 0.1804IL_5TBW_049:IL_8VTW_036 = 0.1917IL_5TBW_049:IL_4WF9_037 = 0.2682IL_5TBW_049:IL_5J7L_278 = 0.2565IL_5TBW_049:IL_7A0S_034 = 0.2367IL_8C3A_052:IL_6CZR_132 = 0.2954IL_8C3A_052:IL_4LFB_020 = 0.2134IL_8C3A_052:IL_5J7L_024 = 0.1871IL_8C3A_052:IL_4V88_413 = 0.2346IL_8C3A_052:IL_8C3A_423 = 0.2153IL_8C3A_052:IL_5TBW_049 = 0.118IL_8C3A_052:IL_8C3A_052 = 0IL_8C3A_052:IL_4V9F_038 = 0.1335IL_8C3A_052:IL_8VTW_036 = 0.1473IL_8C3A_052:IL_4WF9_037 = 0.2327IL_8C3A_052:IL_5J7L_278 = 0.2314IL_8C3A_052:IL_7A0S_034 = 0.2528IL_4V9F_038:IL_6CZR_132 = 0.3309IL_4V9F_038:IL_4LFB_020 = 0.2458IL_4V9F_038:IL_5J7L_024 = 0.2104IL_4V9F_038:IL_4V88_413 = 0.252IL_4V9F_038:IL_8C3A_423 = 0.2344IL_4V9F_038:IL_5TBW_049 = 0.1804IL_4V9F_038:IL_8C3A_052 = 0.1335IL_4V9F_038:IL_4V9F_038 = 0IL_4V9F_038:IL_8VTW_036 = 0.1214IL_4V9F_038:IL_4WF9_037 = 0.2331IL_4V9F_038:IL_5J7L_278 = 0.2055IL_4V9F_038:IL_7A0S_034 = 0.2556IL_8VTW_036:IL_6CZR_132 = 0.3152IL_8VTW_036:IL_4LFB_020 = 0.2469IL_8VTW_036:IL_5J7L_024 = 0.2302IL_8VTW_036:IL_4V88_413 = 0.2555IL_8VTW_036:IL_8C3A_423 = 0.238IL_8VTW_036:IL_5TBW_049 = 0.1917IL_8VTW_036:IL_8C3A_052 = 0.1473IL_8VTW_036:IL_4V9F_038 = 0.1214IL_8VTW_036:IL_8VTW_036 = 0IL_8VTW_036:IL_4WF9_037 = 0.1522IL_8VTW_036:IL_5J7L_278 = 0.1237IL_8VTW_036:IL_7A0S_034 = 0.1785IL_4WF9_037:IL_6CZR_132 = 0.3601IL_4WF9_037:IL_4LFB_020 = 0.3178IL_4WF9_037:IL_5J7L_024 = 0.3181IL_4WF9_037:IL_4V88_413 = 0.3206IL_4WF9_037:IL_8C3A_423 = 0.3089IL_4WF9_037:IL_5TBW_049 = 0.2682IL_4WF9_037:IL_8C3A_052 = 0.2327IL_4WF9_037:IL_4V9F_038 = 0.2331IL_4WF9_037:IL_8VTW_036 = 0.1522IL_4WF9_037:IL_4WF9_037 = 0IL_4WF9_037:IL_5J7L_278 = 0.088IL_4WF9_037:IL_7A0S_034 = 0.1975IL_5J7L_278:IL_6CZR_132 = 0.3556IL_5J7L_278:IL_4LFB_020 = 0.3064IL_5J7L_278:IL_5J7L_024 = 0.3013IL_5J7L_278:IL_4V88_413 = 0.3038IL_5J7L_278:IL_8C3A_423 = 0.2965IL_5J7L_278:IL_5TBW_049 = 0.2565IL_5J7L_278:IL_8C3A_052 = 0.2314IL_5J7L_278:IL_4V9F_038 = 0.2055IL_5J7L_278:IL_8VTW_036 = 0.1237IL_5J7L_278:IL_4WF9_037 = 0.088IL_5J7L_278:IL_5J7L_278 = 0IL_5J7L_278:IL_7A0S_034 = 0.1649IL_7A0S_034:IL_6CZR_132 = 0.31IL_7A0S_034:IL_4LFB_020 = 0.27IL_7A0S_034:IL_5J7L_024 = 0.2723IL_7A0S_034:IL_4V88_413 = 0.2738IL_7A0S_034:IL_8C3A_423 = 0.2737IL_7A0S_034:IL_5TBW_049 = 0.2367IL_7A0S_034:IL_8C3A_052 = 0.2528IL_7A0S_034:IL_4V9F_038 = 0.2556IL_7A0S_034:IL_8VTW_036 = 0.1785IL_7A0S_034:IL_4WF9_037 = 0.1975IL_7A0S_034:IL_5J7L_278 = 0.1649IL_7A0S_034:IL_7A0S_034 = 0IL_6CZR_132IL_4LFB_020IL_5J7L_024IL_4V88_413IL_8C3A_423IL_5TBW_049IL_8C3A_052IL_4V9F_038IL_8VTW_036IL_4WF9_037IL_5J7L_278IL_7A0S_034Discrepancy0.000.100.200.30
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