Motif IL_16252.2 Version IL_16252.2 of this group appears in releases 0.7 to 0.12
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2XZM_050 | 2XZM | 0.1794 | 5 | A | U | 1067 | G | 1073 | * | C | 1012 | G | 1013 | A | 1014 | cWW | cWW |
| 2 | IL_3U5F_054 | 3U5F | 0.0000 | 5 | 6 | U | 1095 | G | 1101 | * | C | 1034 | G | 1035 | A | 1036 | cWW | cWW |
| 3 | IL_2ZJR_023 | 2ZJR | 0.8837 | 0 | X | U | 860 | G | 861 | * | U | 942 | U | 943 | A | 944 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUUUGG*CGA | 2 |
| UG*UUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUUG*G | 2 |
| *U | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 |
|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_16252.2 | Only in the parent motif |
|---|---|---|---|
| IL_16252.1 Compare | IL_3U5F_054, IL_2XZM_050 | IL_2ZJR_023 | |
| IL_99515.1 Compare | IL_2ZJR_023 | IL_3U5F_054, IL_2XZM_050 | IL_3U5H_117, IL_2ZJR_092, IL_2QBG_098, IL_3U5H_110, IL_3U5H_085, IL_1S72_087, IL_4A1B_114, IL_1S72_062, IL_4A1B_081, IL_3UXR_097 |
Children motifs
| Child motif | Common motif instances | Only in IL_16252.2 | Only in the child motif |
|---|---|---|---|
| IL_16252.3 Compare | IL_3U5F_054, IL_2XZM_050 | IL_2ZJR_023 | |
| IL_87218.1 Compare | IL_2ZJR_023 | IL_3U5F_054, IL_2XZM_050 | IL_3U5F_020, IL_1FJG_012, IL_4A1B_069 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.18 | Avg 0.44 | Max 0.90
Coloring options: