Motif IL_16252.2 Version IL_16252.2 of this group appears in releases 0.7 to 0.12

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2	break		3		4		5	1-5	2-3
1	IL_2XZM_050	2XZM	0.1794	5	A	18S RRNA	U	1067	G	1073	*	C	1012	G	1013	A	1014	cWW	cWW
2	IL_3U5F_054	3U5F	0.0000	5	6	18S rRNA	U	1095	G	1101	*	C	1034	G	1035	A	1036	cWW	cWW
3	IL_2ZJR_023	2ZJR	0.8837	0	X	LSU rRNA	U	860	G	861	*	U	942	U	943	A	944	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCUUUGG*CGA	2
UG*UUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUUUG*G	2
*U	1

Release history

Release	0.7	0.8	0.9	0.10	0.11	0.12
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_16252.2	Only in the parent motif
IL_16252.1 Compare	IL_3U5F_054, IL_2XZM_050	IL_2ZJR_023
IL_99515.1 Compare	IL_2ZJR_023	IL_3U5F_054, IL_2XZM_050	IL_3U5H_117, IL_2ZJR_092, IL_2QBG_098, IL_3U5H_110, IL_3U5H_085, IL_1S72_087, IL_4A1B_114, IL_1S72_062, IL_4A1B_081, IL_3UXR_097

Children motifs

Child motif	Common motif instances	Only in IL_16252.2	Only in the child motif
IL_16252.3 Compare	IL_3U5F_054, IL_2XZM_050	IL_2ZJR_023
IL_87218.1 Compare	IL_2ZJR_023	IL_3U5F_054, IL_2XZM_050	IL_3U5F_020, IL_1FJG_012, IL_4A1B_069

Annotations: (3)
Basepair signature: cWW-R-cWW
Heat map statistics: Min 0.18 | Avg 0.44 | Max 0.90

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Coloring options: Nucleotide numbers

Motif IL_16252.2 Version IL_16252.2 of this group appears in releases 0.7 to 0.12 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_16252.2 Version IL_16252.2 of this group appears in releases 0.7 to 0.12

Download

Csv

Json