#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-53-4
1 IL_4NVV_0324NVV0.36000A23S Ribosomal RNAU951G952U953*A917U918A919cWWncWScWW
2 IL_3U5H_0523U5H0.35840525S rRNAA1133G1134A1135*U1123U1124U1125cWWncWScWW
3 IL_3U5H_0623U5H0.18741525S rRNAC1376G1377U1378*A1428U1430G1431cWWcWScWW
4 IL_1S72_0461S720.14691Isolated cWS basepair (H)0 LSU rRNAC1301G1302C1303*G1351C1353G1354cWWcWScWW
5 IL_4IOA_0434IOA0.11551Isolated cWS basepair (H)X LSU rRNAC1210G1211U1212*A1260U1262G1263cWWcWScWW
6 IL_4NVV_0444NVV0.00001A23S Ribosomal RNAC1241G1242U1243*A1293U1295G1296cWWcWScWW
7 IL_2QBG_0452QBG0.12991B23S rRNAC1196G1197U1198*A1247U1249G1250cWWcWScWW
8 IL_1VW3_0351VW30.29381A21S ribosomal RNAC1230A1231U1232*A1280A1282G1283cWWcWScWW
9 IL_4BPP_0654BPP0.52542A18S RRNAU1244A1247U1248*A1407U1408G1409cWWcWW
10 IL_3U5F_0673U5F0.56152618S rRNAU1272A1275U1276*A1436U1437G1438cWWncWScWW
11 IL_2AW7_0492AW70.55802A16S ribosomal RNAU1052A1055U1056*A1204U1205G1206cWWcWW
12 IL_1FJG_0411FJG0.57692Isolated cWS basepair (H)A SSU rRNAU1052A1055U1056*A1204U1205G1206cWWncWScWW
13 IL_3U5F_0933U5F0.92510618S rRNAC1711A1712G1713*U1688A1689G1690ncWWncWW
14 IL_1VW3_0701VW30.97271A21S ribosomal RNAU2437U2439G2440*C2608G2609A2610ncWWcWW
15 IL_3U5F_0653U5F0.88460618S rRNAA1234C1235A1236*U1249U1250U1251cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGU*AGUG4
UGCAU*AUG4
UGU*AUA1
AGA*UUU1
CGC*GACG1
CAU*AUAG1
CAG*UAG1
UAUG*CGA1
ACA*UUU1
Non-Watson-Crick part of the motif
SequenceCounts
G*GU4
GCA*U4
G*U2
G*AC1
A*UA1
A*A1
AU*G1
C*U1

Release history

Release1.14
Date2014-04-27
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_67813.1Only in the parent motif
IL_17212.2
Compare
IL_1S72_046, IL_3U5H_052, IL_3U5H_062, IL_4IOA_043, IL_2QBG_045IL_2AW7_049, IL_3U5F_067, IL_4NVV_044, IL_4BPP_065, IL_3U5F_093, IL_3U5F_065, IL_4NVV_032, IL_1VW3_035, IL_1FJG_041, IL_1VW3_070IL_4ERD_003, IL_2ZI0_001, IL_3V2F_030, IL_3V2F_042, IL_3V2F_025, IL_4J39_001
IL_47174.11
Compare
IL_2AW7_049, IL_4BPP_065, IL_3U5F_065, IL_3U5F_067IL_1S72_046, IL_4NVV_044, IL_2QBG_045, IL_3U5F_093, IL_4IOA_043, IL_3U5H_062, IL_3U5H_052, IL_4NVV_032, IL_1VW3_035, IL_1FJG_041, IL_1VW3_070IL_3KTW_002, IL_2AW7_052, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_4FNJ_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_2O3V_001, IL_4IOA_078, IL_1O9M_003, IL_3U5H_109, IL_4J5V_003, IL_4J5V_002, IL_4J5V_001, IL_2QBG_020, IL_4J5V_006, IL_4J5V_005, IL_3SZX_001, IL_3U5H_076, IL_157D_002, IL_157D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_4BPP_015, IL_4BPP_068, IL_4E59_001, IL_4IOA_044, IL_4A1B_048, IL_2QBG_018, IL_1FJG_058, IL_3V2F_053, IL_2O3X_004, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_3BNL_004, IL_3SYW_001, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_4E48_003, IL_4E48_002, IL_3CUN_002, IL_3FO4_001, IL_4BPP_002, IL_1XJR_003, IL_4BPP_001, IL_2QBG_083, IL_4IOA_054, IL_3TD0_006, IL_3U5H_008, IL_4FNJ_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_4JK0_002, IL_4JK0_001, IL_3TD0_002, IL_4JK0_005, IL_4JK0_004, IL_3U5H_087, IL_4K31_003, IL_3BNQ_001, IL_1S72_047, IL_4BPP_073, IL_4BPP_070, IL_3NJ7_002, IL_4K31_002, IL_4K31_001, IL_2Q1R_002, IL_4BPP_079, IL_4K31_004, IL_4IOA_104, IL_4A1B_061, IL_4J5V_007, IL_1MFQ_003, IL_1MFQ_002, IL_4BPP_037, IL_4IOA_109, IL_4IOA_025, IL_4KYY_001, IL_4BPP_088, IL_4NGF_002, IL_4BPP_082, IL_4BPP_083, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_3UMY_001, IL_5MSF_001, IL_3V2F_081, IL_3V2F_080, IL_4A1C_009, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_3U5F_082, IL_4IOA_030, IL_3U5H_028, IL_3U5F_089, IL_4AOB_005, IL_3BNQ_006, IL_3U5H_017, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_4BPP_034, IL_3IVK_004, IL_405D_002, IL_2QBG_034, IL_1MWL_004, IL_3V2F_094, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_4KYY_003, IL_1UN6_005, IL_3U5H_036, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1FJG_010, IL_3RW6_004, IL_3U5H_133, IL_3V2F_015, IL_3DIR_006, IL_3V2F_017, IL_3LOA_003, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3U5F_015, IL_4IOA_010, IL_3U5H_022, IL_1RPU_001, IL_4A1B_015, IL_1YZ9_001, IL_1FJG_006, IL_4A1B_034, IL_4IOA_013, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_4IOA_019, IL_3U5H_121, IL_4M6D_011, IL_1S72_024, IL_3U5F_063, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_3U5H_049, IL_4BPP_058, IL_3SZX_002, IL_3SZX_003, IL_3U5H_118, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_4A1B_083, IL_3TD0_005, IL_1U6B_005, IL_3TD0_001, IL_4BPP_056, IL_1ZX7_008, IL_1U6B_001, IL_4A1B_027, IL_4A1B_024, IL_4M4O_001, IL_1ZX7_002, IL_4BPP_038, IL_1MZP_001, IL_3U5H_114, IL_3V2F_034, IL_3U5H_116, IL_3MEI_002, IL_4A1B_107, IL_3U5H_051, IL_2QBG_085, IL_4A1B_028, IL_3U5F_072, IL_2QBG_030, IL_3U5H_044, IL_4A1B_104, IL_4M4O_002, IL_1U9S_007, IL_4IOA_091, IL_2O3V_004, IL_2AW7_062
IL_50911.1
Compare
IL_1FJG_041IL_2AW7_049, IL_1S72_046, IL_4NVV_044, IL_3U5H_062, IL_3U5F_093, IL_4IOA_043, IL_2QBG_045, IL_4BPP_065, IL_3U5H_052, IL_3U5F_065, IL_4NVV_032, IL_3U5F_067, IL_1VW3_035, IL_1VW3_070
IL_70173.1
Compare
IL_3U5F_093IL_2AW7_049, IL_1S72_046, IL_4NVV_044, IL_2QBG_045, IL_4IOA_043, IL_3U5H_062, IL_4BPP_065, IL_3U5H_052, IL_3U5F_065, IL_4NVV_032, IL_3U5F_067, IL_1FJG_041, IL_1VW3_035, IL_1VW3_070IL_4A1B_081, IL_3U5H_085, IL_3BNL_002, IL_4M4O_004, IL_4M6D_013

Children motifs

Child motifCommon motif instancesOnly in IL_67813.1Only in the child motif
IL_67813.2
Compare
IL_2AW7_049, IL_1S72_046, IL_4NVV_044, IL_3U5H_062, IL_3U5F_093, IL_4IOA_043, IL_2QBG_045, IL_4BPP_065, IL_3U5H_052, IL_3U5F_065, IL_4NVV_032, IL_3U5F_067, IL_1FJG_041, IL_1VW3_035, IL_1VW3_070IL_3LOA_003, IL_2QBG_085, IL_4CUV_064, IL_1O9M_003
Annotations
  • (12)
  • Isolated cWS basepair (H) (3)
  • Basepair signature
    cWW-cWS-cWW
    Heat map statistics
    Min 0.11 | Avg 0.55 | Max 1.00
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.2979 s