Motif IL_17212.1 Version IL_17212.1 of this group appears in releases 1.6 to 1.11
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | 3-5 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3V2F_025 | 3V2F | 0.8387 | 1 | A | 23S Ribosomal RNA | C | 844 | G | 845 | C | 846 | * | G | 931 | A | 933 | G | 934 | cWW | cWW | |||
2 | IL_2QBG_045 | 2QBG | 0.1727 | 1 | B | 23S rRNA | A | 1247 | U | 1249 | G | 1250 | * | C | 1196 | G | 1197 | U | 1198 | cWW | cSW | cWW | ||
3 | IL_3V2F_042 | 3V2F | 0.0994 | 1 | A | 23S Ribosomal RNA | A | 1247 | U | 1249 | G | 1250 | * | C | 1196 | G | 1197 | U | 1198 | cWW | cSW | cWW | ||
4 | IL_4IOA_043 | 4IOA | 0.0000 | 1 | Isolated cWS basepair (H) | X | LSU rRNA | A | 1260 | U | 1262 | G | 1263 | * | C | 1210 | G | 1211 | U | 1212 | cWW | cSW | cWW | |
5 | IL_1S72_046 | 1S72 | 0.1209 | 1 | Isolated cWS basepair (H) | 0 | LSU rRNA | G | 1351 | C | 1353 | G | 1354 | * | C | 1301 | G | 1302 | C | 1303 | cWW | cSW | cWW | |
6 | IL_3U5H_062 | 3U5H | 0.1389 | 1 | 5 | 25S rRNA | A | 1428 | U | 1430 | G | 1431 | * | C | 1376 | G | 1377 | U | 1378 | cWW | cSW | cWW | ||
7 | IL_3V2F_030 | 3V2F | 0.2896 | 0 | A | 23S Ribosomal RNA | A | 870 | U | 871 | A | 872 | * | U | 905 | G | 906 | U | 907 | cWW | ncSW | cWW | ||
8 | IL_3U5H_052 | 3U5H | 0.3063 | 0 | 5 | 25S rRNA | U | 1123 | U | 1124 | U | 1125 | * | A | 1133 | G | 1134 | A | 1135 | cWW | ncSW | cWW | ||
9 | IL_2ZI0_001 | 2ZI0 | 0.5791 | 0 | Isolated near basepair | D+C | RNA (21-mer) | U | 9 | U | 10 | A | 11 | * | U | 9 | U | 10 | A | 11 | cWW | cWW | ||
10 | IL_4ERD_003 | 4ERD | 0.9149 | 2 | D+C | RNA (22-mer) | U | 119 | C | 120 | C | 123 | * | G | 146 | G | 147 | A | 148 | cWW | cWW | ntsS |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AGUG*CGU | 3 |
CGC*GGAG | 1 |
CGU*AGUG | 1 |
GACG*CGC | 1 |
AUA*UGU | 1 |
UUU*AGA | 1 |
UUA*UUA | 1 |
UCGAC*GGA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GU*G | 3 |
U*G | 2 |
G*GA | 1 |
G*GU | 1 |
AC*G | 1 |
U*U | 1 |
CGA*G | 1 |
Release history
Release | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 |
---|---|---|---|---|---|---|
Date | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 |
Status | > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_17212.1 | Only in the parent motif |
---|---|---|---|
IL_40090.5 Compare | IL_1S72_046, IL_3U5H_052, IL_2QBG_045, IL_4IOA_043, IL_3U5H_062, IL_3V2F_030, IL_3V2F_042 | IL_4ERD_003, IL_3V2F_025, IL_2ZI0_001 | IL_3U5F_093, IL_3U5H_085, IL_4A1B_081 |
IL_15768.1 Compare | IL_3V2F_025, IL_2ZI0_001 | IL_4ERD_003, IL_1S72_046, IL_3U5H_052, IL_3U5H_062, IL_4IOA_043, IL_2QBG_045, IL_3V2F_030, IL_3V2F_042 | IL_1GID_006, IL_1GID_013 |
IL_60643.1 Compare | IL_4ERD_003 | IL_1S72_046, IL_3U5H_052, IL_2ZI0_001, IL_3U5H_062, IL_4IOA_043, IL_2QBG_045, IL_3V2F_030, IL_3V2F_042, IL_3V2F_025 |
Children motifs
Child motif | Common motif instances | Only in IL_17212.1 | Only in the child motif |
---|---|---|---|
IL_17212.2 Compare | IL_4ERD_003, IL_1S72_046, IL_3U5H_052, IL_2ZI0_001, IL_2QBG_045, IL_4IOA_043, IL_3U5H_062, IL_3V2F_030, IL_3V2F_042, IL_3V2F_025 | IL_4J39_001 |
- Annotations
-
- (7)
- Isolated cWS basepair (H) (2)
- Isolated near basepair (1)
- Basepair signature
- cWW-cSW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.47 | Max 0.94
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