#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-43-5
1 IL_3V2F_0253V2F0.83871A23S Ribosomal RNAC844G845C846*G931A933G934cWWcWW
2 IL_2QBG_0452QBG0.17271B23S rRNAA1247U1249G1250*C1196G1197U1198cWWcSWcWW
3 IL_3V2F_0423V2F0.09941A23S Ribosomal RNAA1247U1249G1250*C1196G1197U1198cWWcSWcWW
4 IL_4IOA_0434IOA0.00001Isolated cWS basepair (H)X LSU rRNAA1260U1262G1263*C1210G1211U1212cWWcSWcWW
5 IL_1S72_0461S720.12091Isolated cWS basepair (H)0 LSU rRNAG1351C1353G1354*C1301G1302C1303cWWcSWcWW
6 IL_3U5H_0623U5H0.13891525S rRNAA1428U1430G1431*C1376G1377U1378cWWcSWcWW
7 IL_3V2F_0303V2F0.28960A23S Ribosomal RNAA870U871A872*U905G906U907cWWncSWcWW
8 IL_3U5H_0523U5H0.30630525S rRNAU1123U1124U1125*A1133G1134A1135cWWncSWcWW
9 IL_2ZI0_0012ZI00.57910Isolated near basepairD+CRNA (21-mer)U9U10A11*U9U10A11cWWcWW
10 IL_4ERD_0034ERD0.91492D+CRNA (22-mer)U119C120C123*G146G147A148cWWcWWntsS

3D structures

Complete motif including flanking bases
SequenceCounts
AGUG*CGU3
CGC*GGAG1
CGU*AGUG1
GACG*CGC1
AUA*UGU1
UUU*AGA1
UUA*UUA1
UCGAC*GGA1
Non-Watson-Crick part of the motif
SequenceCounts
GU*G3
U*G2
G*GA1
G*GU1
AC*G1
U*U1
CGA*G1

Release history

Release1.61.71.81.91.101.11
Date2013-08-312013-09-282013-11-052013-12-072014-01-042014-02-01
Status> 2 parentsExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_17212.1Only in the child motif
IL_17212.2
Compare
IL_4ERD_003, IL_1S72_046, IL_3U5H_052, IL_2ZI0_001, IL_2QBG_045, IL_4IOA_043, IL_3U5H_062, IL_3V2F_030, IL_3V2F_042, IL_3V2F_025IL_4J39_001
Annotations
  • (7)
  • Isolated cWS basepair (H) (2)
  • Isolated near basepair (1)
  • Basepair signature
    cWW-cSW-cWW
    Heat map statistics
    Min 0.10 | Avg 0.47 | Max 0.94
    Help

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