Motif IL_18472.2 Version IL_18472.2 of this group appears in releases 3.77 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-4 | 1-8 | 5-6 | 5-7 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5J7L_356 | 5J7L | 0.1503 | 3 | DB | 5S rRNA | G | 56 | A | 57 | A | 58 | A | 59 | C | 60 | * | G | 23 | C | 27 | C | 28 | cWW | cWW | |||
2 | IL_7A0S_103 | 7A0S | 0.0000 | 3 | Y | 5S rRNA | G | 58 | A | 59 | A | 60 | A | 61 | C | 62 | * | G | 25 | C | 29 | C | 30 | cWW | cWW | |||
3 | IL_1MJI_004 | 1MJI | 0.7872 | 2 | Symmetric double minor groove platform | D | 5S rRNA fragment | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | * | A | 34 | C | 37 | C | 38 | tSW | cWW | cWW | cSW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAAAC*GGUCCC | 1 |
GAAAC*GGAACC | 1 |
GAACU*ACCCC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAA*GUCC | 1 |
AAA*GAAC | 1 |
AAC*CCC | 1 |
Release history
Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Symmetric double minor groove platform (1)
- Basepair signature
- cWW-L-R-L-cWW-L
- Heat map statistics
- Min 0.15 | Avg 0.42 | Max 0.97
Coloring options: