Motif IL_34363.1 Version IL_34363.1 of this group appears in releases 0.6 to 1.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	break		9		10		11		12		13	1-5	1-13	2-12	4-12	5-13	8-9
1	IL_3U5H_059	3U5H	0.1528	1		5	25S rRNA	U	1218	C	1219	U	1220	G	1222	A	1223	C	1224	A	1225	G	1226	*	C	1283	C	1284	G	1285	A	1286	A	1287		cWW	tsS	tSH		cWW
2	IL_1S72_043	1S72	0.0000	1	Kink-turn (H)	0	LSU rRNA	C	1147	C	1148	U	1149	G	1151	A	1152	C	1153	A	1154	G	1155	*	C	1212	C	1213	G	1214	A	1215	G	1216	csS	cWW	tsS	tSH	tSs	cWW
3	IL_2QBG_042	2QBG	0.2232	1		B	23S rRNA	C	1043	C	1044	C	1045	G	1047	A	1048	C	1049	A	1050	G	1051	*	U	1108	C	1109	G	1110	A	1111	G	1112	csS	cWW	ntsS	tSH	tSs	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCUAGACAG*CCGAA	1
CCUAGACAG*CCGAG	1
CCCAGACAG*UCGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUAGACA*CGA	2
CCAGACA*CGA	1

Release history

Release	0.6	0.7	0.8	0.9	0.10	0.11	0.12	1.0
Date	2012-04-02	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_34363.1	Only in the parent motif
IL_18488.1 Compare	IL_2QBG_042	IL_3U5H_059, IL_1S72_043	IL_3PYO_040
IL_35361.1 Compare	IL_1S72_043	IL_2QBG_042, IL_3U5H_059

Children motifs

Child motif	Common motif instances	Only in IL_34363.1	Only in the child motif
IL_34363.2 Compare	IL_2QBG_042, IL_3U5H_059, IL_1S72_043		IL_4IOA_039

Annotations: (2)
Kink-turn (H) (1)
Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-R-R-L-cWW
Heat map statistics: Min 0.15 | Avg 0.14 | Max 0.26

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Coloring options: Nucleotide numbers

Motif IL_34363.1 Version IL_34363.1 of this group appears in releases 0.6 to 1.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_34363.1 Version IL_34363.1 of this group appears in releases 0.6 to 1.0

Download

Csv

Json