Motif IL_34363.1 Version IL_34363.1 of this group appears in releases 0.6 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 1-5 | 1-13 | 2-12 | 4-12 | 5-13 | 8-9 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_059 | 3U5H | 0.1528 | 1 | 5 | U | 1218 | C | 1219 | U | 1220 | G | 1222 | A | 1223 | C | 1224 | A | 1225 | G | 1226 | * | C | 1283 | C | 1284 | G | 1285 | A | 1286 | A | 1287 | cWW | tsS | tSH | cWW | |||
| 2 | IL_1S72_043 | 1S72 | 0.0000 | 1 | Kink-turn (H) | 0 | C | 1147 | C | 1148 | U | 1149 | G | 1151 | A | 1152 | C | 1153 | A | 1154 | G | 1155 | * | C | 1212 | C | 1213 | G | 1214 | A | 1215 | G | 1216 | csS | cWW | tsS | tSH | tSs | cWW |
| 3 | IL_2QBG_042 | 2QBG | 0.2232 | 1 | B | C | 1043 | C | 1044 | C | 1045 | G | 1047 | A | 1048 | C | 1049 | A | 1050 | G | 1051 | * | U | 1108 | C | 1109 | G | 1110 | A | 1111 | G | 1112 | csS | cWW | ntsS | tSH | tSs | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAGACAG*CCGAA | 1 |
| CCUAGACAG*CCGAG | 1 |
| CCCAGACAG*UCGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAGACA*CGA | 2 |
| CCAGACA*CGA | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_34363.1 | Only in the parent motif |
|---|---|---|---|
| IL_18488.1 Compare | IL_2QBG_042 | IL_3U5H_059, IL_1S72_043 | IL_3PYO_040 |
| IL_35361.1 Compare | IL_1S72_043 | IL_2QBG_042, IL_3U5H_059 |
Children motifs
| Child motif | Common motif instances | Only in IL_34363.1 | Only in the child motif |
|---|---|---|---|
| IL_34363.2 Compare | IL_2QBG_042, IL_3U5H_059, IL_1S72_043 | IL_4IOA_039 |
- Annotations
-
- (2)
- Kink-turn (H) (1)
- Basepair signature
- cWW-cSS-tSS-L-tSH-tSS-L-R-R-L-cWW
- Heat map statistics
- Min 0.15 | Avg 0.14 | Max 0.26
Coloring options: