Motif IL_22165.1 Version IL_22165.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 4-9 | 4-10 | 5-8 | 5-9 | 6-7 | 6-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VX6_131 | 1VX6 | 0.0000 | 0 | A | LSU rRNA | C | 3628 | U | 3629 | U | 3630 | U | 3631 | U | 3632 | U | 3633 | * | A | 3652 | G | 3653 | C | 3654 | U | 3655 | A | 3656 | G | 3657 | G | 3658 | cWW | ncWW | ncWW | cWW | |||
| 2 | IL_1VW3_094 | 1VW3 | 0.5919 | 0 | A | LSU rRNA | U | 3229 | U | 3230 | A | 3231 | U | 3232 | A | 3233 | A | 3242 | * | U | 3162 | U | 3163 | A | 3164 | U | 3165 | A | 3166 | U | 3167 | A | 3168 | cWW | ncWw | ncwW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUUUU*AGCUAGG | 1 |
| UUAUAA*UUAUAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUU*GCUAG | 1 |
| UAUA*UAUAU | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_22165.1 | Only in the parent motif |
|---|---|---|---|
| IL_01551.1 Compare | IL_1VW3_094, IL_1VX6_131 | IL_1VW3_051, IL_1VWW_027, IL_1VX2_074, IL_1VWW_040 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-R-R-R-L-L-L-cWW
- Heat map statistics
- Min 0.59 | Avg 0.30 | Max 0.59
Coloring options: