Motif IL_22165.1 Version IL_22165.1 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6	break		7		8		9		10		11		12		13	1-13	4-9	4-10	5-8	5-9	6-7	6-8
1	IL_1VX6_131	1VX6	0.0000	0	A	28S ribosomal RNA	C	3628	U	3629	U	3630	U	3631	U	3632	U	3633	*	A	3652	G	3653	C	3654	U	3655	A	3656	G	3657	G	3658	cWW	ncWW		ncWW		cWW
2	IL_1VW3_094	1VW3	0.5919	0	A	21S ribosomal RNA	U	3229	U	3230	A	3231	U	3232	A	3233	A	3242	*	U	3162	U	3163	A	3164	U	3165	A	3166	U	3167	A	3168	cWW		ncWw		ncwW	ncWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUUUU*AGCUAGG	1
UUAUAA*UUAUAUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUUU*GCUAG	1
UAUA*UAUAU	1

Release history

Release	1.18
Date	2014-10-07
Status	New id, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_22165.1	Only in the parent motif
IL_01551.1 Compare	IL_1VW3_094, IL_1VX6_131		IL_1VW3_051, IL_1VWW_027, IL_1VX2_074, IL_1VWW_040

Children motifs

This motif has no children motifs.

Annotations: (2)
Basepair signature: cWW-L-R-R-R-R-R-L-L-L-cWW
Heat map statistics: Min 0.59 | Avg 0.30 | Max 0.59

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Coloring options: Nucleotide numbers

Motif IL_22165.1 Version IL_22165.1 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_22165.1 Version IL_22165.1 of this group appears in releases 1.18 to 1.18

Download

Csv

Json