Motif IL_94438.1 Version IL_94438.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-8 | 3-10 | 4-7 | 5-6 | 9-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3PYO_089 | 3PYO | 0.2474 | 1 | A | LSU rRNA | U | 2636 | U | 2637 | G | 2638 | A | 2639 | G | 2640 | * | C | 2774 | A | 2775 | A | 2776 | G | 2777 | A | 2778 | U | 2779 | A | 2781 | G | 2782 | cWW | tWH | tSH | tHS | cWW | cSH | |
| 2 | IL_2QBG_100 | 2QBG | 0.0000 | 1 | B | LSU rRNA | C | 2636 | U | 2637 | G | 2638 | A | 2639 | G | 2640 | * | C | 2774 | G | 2775 | A | 2776 | G | 2777 | A | 2778 | U | 2779 | A | 2781 | G | 2782 | cWW | tWH | tSH | tHS | cWW | cSH | |
| 3 | IL_2ZJR_094 | 2ZJR | 0.1399 | 1 | tSH-tHS-tHW (H) | X | LSU rRNA | U | 2615 | U | 2616 | G | 2617 | A | 2618 | G | 2619 | * | C | 2754 | A | 2755 | A | 2756 | G | 2757 | A | 2758 | U | 2759 | A | 2761 | G | 2762 | cWW | tWH | tSH | ntHS | cWW | ncSH |
| 4 | IL_1S72_089 | 1S72 | 0.1554 | 1 | 0 | LSU rRNA | C | 2672 | U | 2673 | G | 2674 | A | 2675 | C | 2676 | * | G | 2809 | G | 2810 | A | 2811 | A | 2812 | A | 2813 | A | 2814 | A | 2816 | G | 2817 | cWW | tWH | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUGAG*CAAGAUGAG | 2 |
| CUGAG*CGAGAUGAG | 1 |
| CUGAC*GGAAAAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGA*AAGAUGA | 2 |
| UGA*GAGAUGA | 1 |
| UGA*GAAAAGA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_94438.1 | Only in the parent motif |
|---|---|---|---|
| IL_08760.1 Compare | IL_1S72_089 | IL_3PYO_089, IL_2QBG_100, IL_2ZJR_094 | IL_1S72_056 |
| IL_20844.1 Compare | IL_2ZJR_094 | IL_3PYO_089, IL_1S72_089, IL_2QBG_100 | IL_1S72_083, IL_3F1H_099 |
Children motifs
| Child motif | Common motif instances | Only in IL_94438.1 | Only in the child motif |
|---|---|---|---|
| IL_24022.1 Compare | IL_1S72_089, IL_2ZJR_094 | IL_3PYO_089, IL_2QBG_100 | IL_3UXR_098, IL_3UXR_027, IL_2QBG_031, IL_1S72_034 |
| IL_80652.1 Compare | IL_2QBG_100 | IL_3PYO_089, IL_1S72_089, IL_2ZJR_094 |
- Annotations
-
- (3)
- tSH-tHS-tHW (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.13 | Avg 0.16 | Max 0.30
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