#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 101-105-65-78-9
1 IL_2XZM_0282XZM0.31910 A18S RRNAA543G544G545G546C547A548A549G550*C581U582cWWncSHcWW
2 IL_3U5F_0303U5F0.32130 618S rRNAA550G551G552G553C554A555A556G557*C587U588cWWcSHcWW
3 IL_1FJG_0201FJG0.30660 A SSU rRNAC504G505G506C507C508A509A510C511*G540G541cWWncSHntSWcWW
4 IL_2AW7_0272AW70.29750 A16S ribosomal RNAC504G505G506C507U508A509A510C511*G540G541cWWcWW
5 IL_4A1B_0554A1B0.16830 126S RRNAC1200G1201C1202C1203C1204A1205A1206A1207*U1352G1353cWWcSHcWW
6 IL_1S72_0391S720.14780 0 LSU rRNAU1101C1102C1103C1104C1105A1106A1107G1108*C1254A1255cWWcSHcWW
7 IL_3V2F_0373V2F0.00000 A23S Ribosomal RNAC1004C1005C1006C1007C1008A1009A1010G1011*C1150G1151cWWcSHcWW
8 IL_2QBG_0372QBG0.09930 B23S rRNAU1004C1005C1006C1007A1008A1009A1010G1011*C1150A1151cWWncSHcWW
9 IL_2ZJR_0332ZJR0.16740 X LSU rRNAU1015C1016C1017C1018U1019A1020A1021A1022*U1161A1162cWWncSHcWW
10 IL_3U5H_0543U5H0.34750 525S rRNAU1173G1174C1175C1176G1177G1178A1179A1180*U1325A1326cWWchHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AGGGCAAG*CU2
CGGCCAAC*GG1
CGGCUAAC*GG1
CGCCCAAA*UG1
UCCCCAAG*CA1
CCCCCAAG*CG1
UCCCAAAG*CA1
UCCCUAAA*UA1
UGCCGGAA*UA1
Non-Watson-Crick part of the motif
SequenceCounts
GGGCAA*2
CCCCAA*2
GGCCAA*1
GGCUAA*1
GCCCAA*1
CCCAAA*1
CCCUAA*1
GCCGGA*1

Release history

Release0.70.80.90.100.110.121.0
Date2013-02-172013-02-172013-02-172013-02-172013-02-172013-02-172013-03-04
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_24546.2Only in the parent motif
IL_24546.1
Compare
IL_2QBG_037, IL_1S72_039, IL_3U5H_054, IL_3U5F_030, IL_2XZM_028, IL_2ZJR_033, IL_1FJG_020, IL_2AW7_027, IL_4A1B_055IL_3V2F_037IL_3UXR_037

Children motifs

Child motifCommon motif instancesOnly in IL_24546.2Only in the child motif
IL_24546.3
Compare
IL_2QBG_037, IL_2XZM_028, IL_3U5H_054, IL_3U5F_030, IL_1S72_039, IL_1FJG_020, IL_3V2F_037, IL_2AW7_027, IL_4A1B_055IL_2ZJR_033IL_4IOA_033
Annotations
Basepair signature
cWW-L-L-L-cSH-L-cWW
Heat map statistics
Min 0.09 | Avg 0.25 | Max 0.43
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