#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 10 11 12 13 141-142-133-124-55-116-108-9
1 IL_5J7L_0385J7L0.094508x6 Sarcin-Ricin with inserted Y; G-bulgeAA SSU rRNAG887G888A889G890U891A892C893G894*U905A906A907A908A909C910cWWtSHtHHcSHtWHtHScWW
2 IL_4LFB_0344LFB0.000008x6 Sarcin-Ricin with inserted Y; G-bulgeA SSU rRNAG887G888A889G890U891A892C893G894*U905G906A907A908A909C910cWWtSHtHHcSHtWHtHScWW
3 IL_4V88_4404V880.094108x6 Sarcin-Ricin with inserted Y; G-bulgeA6 SSU rRNAG1111G1112A1113G1114U1115A1116U1117G1118*U1129G1130A1131A1132A1133C1134cWWtSHtHHcSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGAGUACG*UAAAAC1
GGAGUACG*UGAAAC1
GGAGUAUG*UGAAAC1
Non-Watson-Crick part of the motif
SequenceCounts
GAGUAC*AAAA1
GAGUAC*GAAA1
GAGUAU*GAAA1

Release history

Release3.33.43.53.63.73.83.93.103.23.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.79
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-09-262018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-03
StatusExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • 8x6 Sarcin-Ricin with inserted Y; G-bulge (3)
  • Basepair signature
    cWW-tSH-tHH-cSH-tWH-tHS-L-cWW
    Heat map statistics
    Min 0.09 | Avg 0.07 | Max 0.12
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.1488 s