RNA 3D Hub //

Motif IL_24982.4 Version IL_24982.4 of this group appears in releases 1.1 to 1.4

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-93-84-75-67-8
1 IL_3V2F_0503V2F0.48740A23S Ribosomal RNAU1357G1358A1359A1360G1361*C1370G1371U1372A1373G1374cWWtSHtHScWW
2 IL_2QBG_0522QBG0.24290B23S rRNAC1357G1358A1359G1360G1361*C1370G1371U1372A1373G1374cWWtSHtHWtHScWW
3 IL_4IOA_0514IOA0.28770tSH-tHW-tHSX LSU rRNAU1370G1371A1372G1373G1374*C1383G1384C1385A1386G1387cWWtSHtHWntHScWWncSH
4 IL_2AW7_0302AW70.20050A16S ribosomal RNAU757C758A759G760G761*C580G581C582A583G584cWWtSHtHWtHScWW
5 IL_1FJG_0231FJG0.23340tSH-tHW-tHS (H)A SSU rRNAU757G758A759G760G761*U580G581U582A583G584cWWtSHtHWcWW
6 IL_1S72_0231S720.25220tSH-tHW-tHS (H)0 LSU rRNAC719G720A721G722G723*C705G706C707A708G709cWWtSHtHWtHScWW
7 IL_2XZM_0352XZM0.24090A18S RRNAU946C947A948A949G950*C621G622U623A624G625ncWWtSHtHScWW
8 IL_3U5F_0353U5F0.15890618S rRNAU968C969A970A971G972*C627G628U629A630G631cWWtSHtHWtHScWW
9 IL_3U5F_0533U5F0.00000618S rRNAC990G991A992A993G994*C1010G1011U1012A1013G1014cWWtSHtHWtHScWW
10 IL_2XZM_0492XZM0.14910A18S RRNAC968A969A970A971G972*C988G989U990A991G992cWWtSHtHWtHScWW
11 IL_1FJG_0331FJG0.15850tSH-tHW-tHS (H)A SSU rRNAC779A780A781A782C783*G799G800U801A802G803cWWtSHtHWtHScWW
12 IL_2AW7_0402AW70.19300A16S ribosomal RNAC779A780A781A782C783*G799G800U801A802G803cWWtSHtHWtHScWW
13 IL_1S72_0551S720.28930tSH-tHW-tHS (H)0 LSU rRNAU1639C1640A1641A1642C1643*G1542G1543U1544C1545G1546cWWtSHtHWtHScWW
14 IL_2QWY_0042QWY0.53430BSAM-II riboswitchA46A47A48A49G50*C16G17U18A19U20cWWtSHtHWcWW
15 IL_2QBG_0582QBG0.50620B23S rRNAU1513G1514A1515G1516G1517*U1474G1475U1476A1477G1478cWWtSHtHWcWW
16 IL_4IOA_0264IOA0.590505x5 Sarcin-Ricin with intercalated A; G-bulgeX LSU rRNAC927G928A929A930G931*U871G872U873A874G875cWWtSHtHWcWWncSH

3D structures

Complete motif including flanking bases
SequenceCounts
UGAGG*UGUAG2
UCAAG*CGUAG2
CAAAC*GGUAG2
UGAAG*CGUAG1
CGAGG*CGUAG1
UGAGG*CGCAG1
UCAGG*CGCAG1
CGAGG*CGCAG1
CGAAG*CGUAG1
CAAAG*CGUAG1
UCAAC*GGUCG1
AAAAG*CGUAU1
CGAAG*UGUAG1
Non-Watson-Crick part of the motif
SequenceCounts
AAA*GUA4
GAA*GUA3
GAG*GUA3
GAG*GCA2
CAA*GUA2
CAG*GCA1
CAA*GUC1

Release history

Release1.11.21.31.4
Date2013-04-082013-05-042013-06-012013-07-01
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_24982.4Only in the child motif
IL_24982.5
Compare		IL_1S72_055, IL_3U5F_053, IL_2QBG_052, IL_2QBG_058, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_1S72_023, IL_1FJG_023, IL_3V2F_050, IL_2AW7_030, IL_2QWY_004, IL_4IOA_051, IL_4IOA_026IL_2XZM_049, IL_2XZM_035IL_4BPP_035, IL_4BPP_049
Annotations
  • (10)
  • tSH-tHW-tHS (H) (4)
  • 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)
  • tSH-tHW-tHS (1)
    • Basepair signature
    cWW-tSH-tHW-tHS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.36 | Max 0.77
    Help

    Coloring options:

    IL_3V2F_050:IL_3V2F_050 = 0IL_3V2F_050:IL_2QBG_052 = 0.4958IL_3V2F_050:IL_4IOA_051 = 0.4062IL_3V2F_050:IL_2AW7_030 = 0.4128IL_3V2F_050:IL_1FJG_023 = 0.5012IL_3V2F_050:IL_1S72_023 = 0.4681IL_3V2F_050:IL_2XZM_035 = 0.4024IL_3V2F_050:IL_3U5F_035 = 0.4606IL_3V2F_050:IL_3U5F_053 = 0.4874IL_3V2F_050:IL_2XZM_049 = 0.4863IL_3V2F_050:IL_1FJG_033 = 0.5068IL_3V2F_050:IL_2AW7_040 = 0.5326IL_3V2F_050:IL_1S72_055 = 0.5489IL_3V2F_050:IL_2QWY_004 = 0.7362IL_3V2F_050:IL_2QBG_058 = 0.7652IL_3V2F_050:IL_4IOA_026 = 0.7407IL_2QBG_052:IL_3V2F_050 = 0.4958IL_2QBG_052:IL_2QBG_052 = 0IL_2QBG_052:IL_4IOA_051 = 0.257IL_2QBG_052:IL_2AW7_030 = 0.254IL_2QBG_052:IL_1FJG_023 = 0.2725IL_2QBG_052:IL_1S72_023 = 0.3148IL_2QBG_052:IL_2XZM_035 = 0.3154IL_2QBG_052:IL_3U5F_035 = 0.2838IL_2QBG_052:IL_3U5F_053 = 0.2429IL_2QBG_052:IL_2XZM_049 = 0.2421IL_2QBG_052:IL_1FJG_033 = 0.3075IL_2QBG_052:IL_2AW7_040 = 0.3642IL_2QBG_052:IL_1S72_055 = 0.4563IL_2QBG_052:IL_2QWY_004 = 0.6391IL_2QBG_052:IL_2QBG_058 = 0.6107IL_2QBG_052:IL_4IOA_026 = 0.6351IL_4IOA_051:IL_3V2F_050 = 0.4062IL_4IOA_051:IL_2QBG_052 = 0.257IL_4IOA_051:IL_4IOA_051 = 0IL_4IOA_051:IL_2AW7_030 = 0.1787IL_4IOA_051:IL_1FJG_023 = 0.2679IL_4IOA_051:IL_1S72_023 = 0.29IL_4IOA_051:IL_2XZM_035 = 0.3025IL_4IOA_051:IL_3U5F_035 = 0.2635IL_4IOA_051:IL_3U5F_053 = 0.2877IL_4IOA_051:IL_2XZM_049 = 0.2935IL_4IOA_051:IL_1FJG_033 = 0.352IL_4IOA_051:IL_2AW7_040 = 0.4015IL_4IOA_051:IL_1S72_055 = 0.4136IL_4IOA_051:IL_2QWY_004 = 0.6536IL_4IOA_051:IL_2QBG_058 = 0.6432IL_4IOA_051:IL_4IOA_026 = 0.6425IL_2AW7_030:IL_3V2F_050 = 0.4128IL_2AW7_030:IL_2QBG_052 = 0.254IL_2AW7_030:IL_4IOA_051 = 0.1787IL_2AW7_030:IL_2AW7_030 = 0IL_2AW7_030:IL_1FJG_023 = 0.2041IL_2AW7_030:IL_1S72_023 = 0.2173IL_2AW7_030:IL_2XZM_035 = 0.2141IL_2AW7_030:IL_3U5F_035 = 0.1802IL_2AW7_030:IL_3U5F_053 = 0.2005IL_2AW7_030:IL_2XZM_049 = 0.2193IL_2AW7_030:IL_1FJG_033 = 0.2542IL_2AW7_030:IL_2AW7_040 = 0.295IL_2AW7_030:IL_1S72_055 = 0.3043IL_2AW7_030:IL_2QWY_004 = 0.5561IL_2AW7_030:IL_2QBG_058 = 0.5531IL_2AW7_030:IL_4IOA_026 = 0.5581IL_1FJG_023:IL_3V2F_050 = 0.5012IL_1FJG_023:IL_2QBG_052 = 0.2725IL_1FJG_023:IL_4IOA_051 = 0.2679IL_1FJG_023:IL_2AW7_030 = 0.2041IL_1FJG_023:IL_1FJG_023 = 0IL_1FJG_023:IL_1S72_023 = 0.2821IL_1FJG_023:IL_2XZM_035 = 0.2883IL_1FJG_023:IL_3U5F_035 = 0.218IL_1FJG_023:IL_3U5F_053 = 0.2334IL_1FJG_023:IL_2XZM_049 = 0.2354IL_1FJG_023:IL_1FJG_033 = 0.3048IL_1FJG_023:IL_2AW7_040 = 0.3439IL_1FJG_023:IL_1S72_055 = 0.3519IL_1FJG_023:IL_2QWY_004 = 0.5795IL_1FJG_023:IL_2QBG_058 = 0.5373IL_1FJG_023:IL_4IOA_026 = 0.5325IL_1S72_023:IL_3V2F_050 = 0.4681IL_1S72_023:IL_2QBG_052 = 0.3148IL_1S72_023:IL_4IOA_051 = 0.29IL_1S72_023:IL_2AW7_030 = 0.2173IL_1S72_023:IL_1FJG_023 = 0.2821IL_1S72_023:IL_1S72_023 = 0IL_1S72_023:IL_2XZM_035 = 0.3047IL_1S72_023:IL_3U5F_035 = 0.3211IL_1S72_023:IL_3U5F_053 = 0.2522IL_1S72_023:IL_2XZM_049 = 0.2674IL_1S72_023:IL_1FJG_033 = 0.2875IL_1S72_023:IL_2AW7_040 = 0.3236IL_1S72_023:IL_1S72_055 = 0.2963IL_1S72_023:IL_2QWY_004 = 0.4487IL_1S72_023:IL_2QBG_058 = 0.5176IL_1S72_023:IL_4IOA_026 = 0.5195IL_2XZM_035:IL_3V2F_050 = 0.4024IL_2XZM_035:IL_2QBG_052 = 0.3154IL_2XZM_035:IL_4IOA_051 = 0.3025IL_2XZM_035:IL_2AW7_030 = 0.2141IL_2XZM_035:IL_1FJG_023 = 0.2883IL_2XZM_035:IL_1S72_023 = 0.3047IL_2XZM_035:IL_2XZM_035 = 0IL_2XZM_035:IL_3U5F_035 = 0.2278IL_2XZM_035:IL_3U5F_053 = 0.2409IL_2XZM_035:IL_2XZM_049 = 0.2473IL_2XZM_035:IL_1FJG_033 = 0.269IL_2XZM_035:IL_2AW7_040 = 0.2802IL_2XZM_035:IL_1S72_055 = 0.3589IL_2XZM_035:IL_2QWY_004 = 0.5581IL_2XZM_035:IL_2QBG_058 = 0.56IL_2XZM_035:IL_4IOA_026 = 0.5742IL_3U5F_035:IL_3V2F_050 = 0.4606IL_3U5F_035:IL_2QBG_052 = 0.2838IL_3U5F_035:IL_4IOA_051 = 0.2635IL_3U5F_035:IL_2AW7_030 = 0.1802IL_3U5F_035:IL_1FJG_023 = 0.218IL_3U5F_035:IL_1S72_023 = 0.3211IL_3U5F_035:IL_2XZM_035 = 0.2278IL_3U5F_035:IL_3U5F_035 = 0IL_3U5F_035:IL_3U5F_053 = 0.1589IL_3U5F_035:IL_2XZM_049 = 0.1775IL_3U5F_035:IL_1FJG_033 = 0.2065IL_3U5F_035:IL_2AW7_040 = 0.2423IL_3U5F_035:IL_1S72_055 = 0.2934IL_3U5F_035:IL_2QWY_004 = 0.5898IL_3U5F_035:IL_2QBG_058 = 0.5429IL_3U5F_035:IL_4IOA_026 = 0.6078IL_3U5F_053:IL_3V2F_050 = 0.4874IL_3U5F_053:IL_2QBG_052 = 0.2429IL_3U5F_053:IL_4IOA_051 = 0.2877IL_3U5F_053:IL_2AW7_030 = 0.2005IL_3U5F_053:IL_1FJG_023 = 0.2334IL_3U5F_053:IL_1S72_023 = 0.2522IL_3U5F_053:IL_2XZM_035 = 0.2409IL_3U5F_053:IL_3U5F_035 = 0.1589IL_3U5F_053:IL_3U5F_053 = 0IL_3U5F_053:IL_2XZM_049 = 0.1491IL_3U5F_053:IL_1FJG_033 = 0.1585IL_3U5F_053:IL_2AW7_040 = 0.193IL_3U5F_053:IL_1S72_055 = 0.2893IL_3U5F_053:IL_2QWY_004 = 0.5343IL_3U5F_053:IL_2QBG_058 = 0.5062IL_3U5F_053:IL_4IOA_026 = 0.5905IL_2XZM_049:IL_3V2F_050 = 0.4863IL_2XZM_049:IL_2QBG_052 = 0.2421IL_2XZM_049:IL_4IOA_051 = 0.2935IL_2XZM_049:IL_2AW7_030 = 0.2193IL_2XZM_049:IL_1FJG_023 = 0.2354IL_2XZM_049:IL_1S72_023 = 0.2674IL_2XZM_049:IL_2XZM_035 = 0.2473IL_2XZM_049:IL_3U5F_035 = 0.1775IL_2XZM_049:IL_3U5F_053 = 0.1491IL_2XZM_049:IL_2XZM_049 = 0IL_2XZM_049:IL_1FJG_033 = 0.1872IL_2XZM_049:IL_2AW7_040 = 0.2256IL_2XZM_049:IL_1S72_055 = 0.3322IL_2XZM_049:IL_2QWY_004 = 0.5208IL_2XZM_049:IL_2QBG_058 = 0.5047IL_2XZM_049:IL_4IOA_026 = 0.5938IL_1FJG_033:IL_3V2F_050 = 0.5068IL_1FJG_033:IL_2QBG_052 = 0.3075IL_1FJG_033:IL_4IOA_051 = 0.352IL_1FJG_033:IL_2AW7_030 = 0.2542IL_1FJG_033:IL_1FJG_023 = 0.3048IL_1FJG_033:IL_1S72_023 = 0.2875IL_1FJG_033:IL_2XZM_035 = 0.269IL_1FJG_033:IL_3U5F_035 = 0.2065IL_1FJG_033:IL_3U5F_053 = 0.1585IL_1FJG_033:IL_2XZM_049 = 0.1872IL_1FJG_033:IL_1FJG_033 = 0IL_1FJG_033:IL_2AW7_040 = 0.0949IL_1FJG_033:IL_1S72_055 = 0.2496IL_1FJG_033:IL_2QWY_004 = 0.4901IL_1FJG_033:IL_2QBG_058 = 0.4506IL_1FJG_033:IL_4IOA_026 = 0.5448IL_2AW7_040:IL_3V2F_050 = 0.5326IL_2AW7_040:IL_2QBG_052 = 0.3642IL_2AW7_040:IL_4IOA_051 = 0.4015IL_2AW7_040:IL_2AW7_030 = 0.295IL_2AW7_040:IL_1FJG_023 = 0.3439IL_2AW7_040:IL_1S72_023 = 0.3236IL_2AW7_040:IL_2XZM_035 = 0.2802IL_2AW7_040:IL_3U5F_035 = 0.2423IL_2AW7_040:IL_3U5F_053 = 0.193IL_2AW7_040:IL_2XZM_049 = 0.2256IL_2AW7_040:IL_1FJG_033 = 0.0949IL_2AW7_040:IL_2AW7_040 = 0IL_2AW7_040:IL_1S72_055 = 0.2595IL_2AW7_040:IL_2QWY_004 = 0.4769IL_2AW7_040:IL_2QBG_058 = 0.4247IL_2AW7_040:IL_4IOA_026 = 0.5558IL_1S72_055:IL_3V2F_050 = 0.5489IL_1S72_055:IL_2QBG_052 = 0.4563IL_1S72_055:IL_4IOA_051 = 0.4136IL_1S72_055:IL_2AW7_030 = 0.3043IL_1S72_055:IL_1FJG_023 = 0.3519IL_1S72_055:IL_1S72_023 = 0.2963IL_1S72_055:IL_2XZM_035 = 0.3589IL_1S72_055:IL_3U5F_035 = 0.2934IL_1S72_055:IL_3U5F_053 = 0.2893IL_1S72_055:IL_2XZM_049 = 0.3322IL_1S72_055:IL_1FJG_033 = 0.2496IL_1S72_055:IL_2AW7_040 = 0.2595IL_1S72_055:IL_1S72_055 = 0IL_1S72_055:IL_2QWY_004 = 0.4464IL_1S72_055:IL_2QBG_058 = 0.4806IL_1S72_055:IL_4IOA_026 = 0.504IL_2QWY_004:IL_3V2F_050 = 0.7362IL_2QWY_004:IL_2QBG_052 = 0.6391IL_2QWY_004:IL_4IOA_051 = 0.6536IL_2QWY_004:IL_2AW7_030 = 0.5561IL_2QWY_004:IL_1FJG_023 = 0.5795IL_2QWY_004:IL_1S72_023 = 0.4487IL_2QWY_004:IL_2XZM_035 = 0.5581IL_2QWY_004:IL_3U5F_035 = 0.5898IL_2QWY_004:IL_3U5F_053 = 0.5343IL_2QWY_004:IL_2XZM_049 = 0.5208IL_2QWY_004:IL_1FJG_033 = 0.4901IL_2QWY_004:IL_2AW7_040 = 0.4769IL_2QWY_004:IL_1S72_055 = 0.4464IL_2QWY_004:IL_2QWY_004 = 0IL_2QWY_004:IL_2QBG_058 = 0.4211IL_2QWY_004:IL_4IOA_026 = 0.4771IL_2QBG_058:IL_3V2F_050 = 0.7652IL_2QBG_058:IL_2QBG_052 = 0.6107IL_2QBG_058:IL_4IOA_051 = 0.6432IL_2QBG_058:IL_2AW7_030 = 0.5531IL_2QBG_058:IL_1FJG_023 = 0.5373IL_2QBG_058:IL_1S72_023 = 0.5176IL_2QBG_058:IL_2XZM_035 = 0.56IL_2QBG_058:IL_3U5F_035 = 0.5429IL_2QBG_058:IL_3U5F_053 = 0.5062IL_2QBG_058:IL_2XZM_049 = 0.5047IL_2QBG_058:IL_1FJG_033 = 0.4506IL_2QBG_058:IL_2AW7_040 = 0.4247IL_2QBG_058:IL_1S72_055 = 0.4806IL_2QBG_058:IL_2QWY_004 = 0.4211IL_2QBG_058:IL_2QBG_058 = 0IL_2QBG_058:IL_4IOA_026 = 0.4462IL_4IOA_026:IL_3V2F_050 = 0.7407IL_4IOA_026:IL_2QBG_052 = 0.6351IL_4IOA_026:IL_4IOA_051 = 0.6425IL_4IOA_026:IL_2AW7_030 = 0.5581IL_4IOA_026:IL_1FJG_023 = 0.5325IL_4IOA_026:IL_1S72_023 = 0.5195IL_4IOA_026:IL_2XZM_035 = 0.5742IL_4IOA_026:IL_3U5F_035 = 0.6078IL_4IOA_026:IL_3U5F_053 = 0.5905IL_4IOA_026:IL_2XZM_049 = 0.5938IL_4IOA_026:IL_1FJG_033 = 0.5448IL_4IOA_026:IL_2AW7_040 = 0.5558IL_4IOA_026:IL_1S72_055 = 0.504IL_4IOA_026:IL_2QWY_004 = 0.4771IL_4IOA_026:IL_2QBG_058 = 0.4462IL_4IOA_026:IL_4IOA_026 = 0IL_3V2F_050IL_2QBG_052IL_4IOA_051IL_2AW7_030IL_1FJG_023IL_1S72_023IL_2XZM_035IL_3U5F_035IL_3U5F_053IL_2XZM_049IL_1FJG_033IL_2AW7_040IL_1S72_055IL_2QWY_004IL_2QBG_058IL_4IOA_026Discrepancy0.000.200.400.60
    Copyright 2025 BGSU RNA group. Page generated in 0.6079 s