Motif IL_24982.4 Version IL_24982.4 of this group appears in releases 1.1 to 1.4

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	3-8	4-7	5-6	7-8
1	IL_3V2F_050	3V2F	0.4874	0		A	23S Ribosomal RNA	U	1357	G	1358	A	1359	A	1360	G	1361	*	C	1370	G	1371	U	1372	A	1373	G	1374	cWW	tSH		tHS	cWW
2	IL_2QBG_052	2QBG	0.2429	0		B	23S rRNA	C	1357	G	1358	A	1359	G	1360	G	1361	*	C	1370	G	1371	U	1372	A	1373	G	1374	cWW	tSH	tHW	tHS	cWW
3	IL_4IOA_051	4IOA	0.2877	0	tSH-tHW-tHS	X	LSU rRNA	U	1370	G	1371	A	1372	G	1373	G	1374	*	C	1383	G	1384	C	1385	A	1386	G	1387	cWW	tSH	tHW	ntHS	cWW	ncSH
4	IL_2AW7_030	2AW7	0.2005	0		A	16S ribosomal RNA	U	757	C	758	A	759	G	760	G	761	*	C	580	G	581	C	582	A	583	G	584	cWW	tSH	tHW	tHS	cWW
5	IL_1FJG_023	1FJG	0.2334	0	tSH-tHW-tHS (H)	A	SSU rRNA	U	757	G	758	A	759	G	760	G	761	*	U	580	G	581	U	582	A	583	G	584	cWW	tSH	tHW		cWW
6	IL_1S72_023	1S72	0.2522	0	tSH-tHW-tHS (H)	0	LSU rRNA	C	719	G	720	A	721	G	722	G	723	*	C	705	G	706	C	707	A	708	G	709	cWW	tSH	tHW	tHS	cWW
7	IL_2XZM_035	2XZM	0.2409	0		A	18S RRNA	U	946	C	947	A	948	A	949	G	950	*	C	621	G	622	U	623	A	624	G	625	ncWW	tSH		tHS	cWW
8	IL_3U5F_035	3U5F	0.1589	0		6	18S rRNA	U	968	C	969	A	970	A	971	G	972	*	C	627	G	628	U	629	A	630	G	631	cWW	tSH	tHW	tHS	cWW
9	IL_3U5F_053	3U5F	0.0000	0		6	18S rRNA	C	990	G	991	A	992	A	993	G	994	*	C	1010	G	1011	U	1012	A	1013	G	1014	cWW	tSH	tHW	tHS	cWW
10	IL_2XZM_049	2XZM	0.1491	0		A	18S RRNA	C	968	A	969	A	970	A	971	G	972	*	C	988	G	989	U	990	A	991	G	992	cWW	tSH	tHW	tHS	cWW
11	IL_1FJG_033	1FJG	0.1585	0	tSH-tHW-tHS (H)	A	SSU rRNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW	tSH	tHW	tHS	cWW
12	IL_2AW7_040	2AW7	0.1930	0		A	16S ribosomal RNA	C	779	A	780	A	781	A	782	C	783	*	G	799	G	800	U	801	A	802	G	803	cWW	tSH	tHW	tHS	cWW
13	IL_1S72_055	1S72	0.2893	0	tSH-tHW-tHS (H)	0	LSU rRNA	U	1639	C	1640	A	1641	A	1642	C	1643	*	G	1542	G	1543	U	1544	C	1545	G	1546	cWW	tSH	tHW	tHS	cWW
14	IL_2QWY_004	2QWY	0.5343	0		B	SAM-II riboswitch	A	46	A	47	A	48	A	49	G	50	*	C	16	G	17	U	18	A	19	U	20	cWW	tSH	tHW		cWW
15	IL_2QBG_058	2QBG	0.5062	0		B	23S rRNA	U	1513	G	1514	A	1515	G	1516	G	1517	*	U	1474	G	1475	U	1476	A	1477	G	1478	cWW	tSH	tHW		cWW
16	IL_4IOA_026	4IOA	0.5905	0	5x5 Sarcin-Ricin with intercalated A; G-bulge	X	LSU rRNA	C	927	G	928	A	929	A	930	G	931	*	U	871	G	872	U	873	A	874	G	875	cWW	tSH	tHW		cWW	ncSH

3D structures

Complete motif including flanking bases

Sequence	Counts
UGAGG*UGUAG	2
UCAAG*CGUAG	2
CAAAC*GGUAG	2
UGAAG*CGUAG	1
CGAGG*CGUAG	1
UGAGG*CGCAG	1
UCAGG*CGCAG	1
CGAGG*CGCAG	1
CGAAG*CGUAG	1
CAAAG*CGUAG	1
UCAAC*GGUCG	1
AAAAG*CGUAU	1
CGAAG*UGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAA*GUA	4
GAA*GUA	3
GAG*GUA	3
GAG*GCA	2
CAA*GUA	2
CAG*GCA	1
CAA*GUC	1

Release history

Release	1.1	1.2	1.3	1.4
Date	2013-04-08	2013-05-04	2013-06-01	2013-07-01
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_24982.4	Only in the parent motif
IL_24982.3 Compare	IL_1S72_055, IL_2QWY_004, IL_2QBG_058, IL_2AW7_040, IL_1FJG_033, IL_1FJG_023, IL_1S72_023, IL_3U5F_035, IL_2AW7_030, IL_3V2F_050, IL_2XZM_049, IL_2QBG_052, IL_3U5F_053, IL_2XZM_035	IL_4IOA_026, IL_4IOA_051	IL_2ZJR_050

Children motifs

Child motif	Common motif instances	Only in IL_24982.4	Only in the child motif
IL_24982.5 Compare	IL_1S72_055, IL_3U5F_053, IL_2QBG_052, IL_2QBG_058, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_1S72_023, IL_1FJG_023, IL_3V2F_050, IL_2AW7_030, IL_2QWY_004, IL_4IOA_051, IL_4IOA_026	IL_2XZM_049, IL_2XZM_035	IL_4BPP_035, IL_4BPP_049

Annotations: (10)
tSH-tHW-tHS (H) (4)
5x5 Sarcin-Ricin with intercalated A; G-bulge (1)
tSH-tHW-tHS (1)
Basepair signature: cWW-tSH-tHW-tHS-cWW
Heat map statistics: Min 0.09 | Avg 0.36 | Max 0.77

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Coloring options: Nucleotide numbers

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