Motif IL_24982.5 Version IL_24982.5 of this group appears in releases 1.5 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | 7-8 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4IOA_026 | 4IOA | 0.5905 | 0 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | X | LSU rRNA | C | 927 | G | 928 | A | 929 | A | 930 | G | 931 | * | U | 871 | G | 872 | U | 873 | A | 874 | G | 875 | cWW | tSH | tHW | cWW | ncSH | |
2 | IL_2QBG_058 | 2QBG | 0.5062 | 0 | B | 23S rRNA | U | 1513 | G | 1514 | A | 1515 | G | 1516 | G | 1517 | * | U | 1474 | G | 1475 | U | 1476 | A | 1477 | G | 1478 | cWW | tSH | tHW | cWW | |||
3 | IL_2QWY_004 | 2QWY | 0.5343 | 0 | B | SAM-II riboswitch | A | 46 | A | 47 | A | 48 | A | 49 | G | 50 | * | C | 16 | G | 17 | U | 18 | A | 19 | U | 20 | cWW | tSH | tHW | cWW | |||
4 | IL_1S72_023 | 1S72 | 0.2522 | 0 | tSH-tHW-tHS (H) | 0 | LSU rRNA | C | 719 | G | 720 | A | 721 | G | 722 | G | 723 | * | C | 705 | G | 706 | C | 707 | A | 708 | G | 709 | cWW | tSH | tHW | tHS | cWW | |
5 | IL_1S72_055 | 1S72 | 0.2893 | 0 | tSH-tHW-tHS (H) | 0 | LSU rRNA | U | 1639 | C | 1640 | A | 1641 | A | 1642 | C | 1643 | * | G | 1542 | G | 1543 | U | 1544 | C | 1545 | G | 1546 | cWW | tSH | tHW | tHS | cWW | |
6 | IL_2AW7_040 | 2AW7 | 0.1930 | 0 | A | 16S ribosomal RNA | C | 779 | A | 780 | A | 781 | A | 782 | C | 783 | * | G | 799 | G | 800 | U | 801 | A | 802 | G | 803 | cWW | tSH | tHW | tHS | cWW | ||
7 | IL_1FJG_033 | 1FJG | 0.1585 | 0 | tSH-tHW-tHS (H) | A | SSU rRNA | C | 779 | A | 780 | A | 781 | A | 782 | C | 783 | * | G | 799 | G | 800 | U | 801 | A | 802 | G | 803 | cWW | tSH | tHW | tHS | cWW | |
8 | IL_4BPP_049 | 4BPP | 0.0953 | 0 | A | 18S RRNA | C | 968 | A | 969 | A | 970 | A | 971 | G | 972 | * | C | 988 | G | 989 | U | 990 | A | 991 | G | 992 | cWW | tSH | tHW | tHS | cWW | ||
9 | IL_3U5F_053 | 3U5F | 0.0000 | 0 | 6 | 18S rRNA | C | 990 | G | 991 | A | 992 | A | 993 | G | 994 | * | C | 1010 | G | 1011 | U | 1012 | A | 1013 | G | 1014 | cWW | tSH | tHW | tHS | cWW | ||
10 | IL_3U5F_035 | 3U5F | 0.1589 | 0 | 6 | 18S rRNA | U | 968 | C | 969 | A | 970 | A | 971 | G | 972 | * | C | 627 | G | 628 | U | 629 | A | 630 | G | 631 | cWW | tSH | tHW | tHS | cWW | ||
11 | IL_4BPP_035 | 4BPP | 0.1821 | 0 | A | 18S RRNA | U | 946 | C | 947 | A | 948 | A | 949 | G | 950 | * | C | 621 | G | 622 | U | 623 | A | 624 | G | 625 | cWW | tSH | tHW | tHS | cWW | ||
12 | IL_1FJG_023 | 1FJG | 0.2334 | 0 | tSH-tHW-tHS (H) | A | SSU rRNA | U | 757 | G | 758 | A | 759 | G | 760 | G | 761 | * | U | 580 | G | 581 | U | 582 | A | 583 | G | 584 | cWW | tSH | tHW | cWW | ||
13 | IL_2AW7_030 | 2AW7 | 0.2005 | 0 | A | 16S ribosomal RNA | U | 757 | C | 758 | A | 759 | G | 760 | G | 761 | * | C | 580 | G | 581 | C | 582 | A | 583 | G | 584 | cWW | tSH | tHW | tHS | cWW | ||
14 | IL_4IOA_051 | 4IOA | 0.2877 | 0 | tSH-tHW-tHS | X | LSU rRNA | U | 1370 | G | 1371 | A | 1372 | G | 1373 | G | 1374 | * | C | 1383 | G | 1384 | C | 1385 | A | 1386 | G | 1387 | cWW | tSH | tHW | ntHS | cWW | ncSH |
15 | IL_2QBG_052 | 2QBG | 0.2429 | 0 | B | 23S rRNA | C | 1357 | G | 1358 | A | 1359 | G | 1360 | G | 1361 | * | C | 1370 | G | 1371 | U | 1372 | A | 1373 | G | 1374 | cWW | tSH | tHW | tHS | cWW | ||
16 | IL_3V2F_050 | 3V2F | 0.4874 | 0 | A | 23S Ribosomal RNA | U | 1357 | G | 1358 | A | 1359 | A | 1360 | G | 1361 | * | C | 1370 | G | 1371 | U | 1372 | A | 1373 | G | 1374 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGAGG*UGUAG | 2 |
CAAAC*GGUAG | 2 |
UCAAG*CGUAG | 2 |
CGAAG*UGUAG | 1 |
AAAAG*CGUAU | 1 |
CGAGG*CGCAG | 1 |
UCAAC*GGUCG | 1 |
CAAAG*CGUAG | 1 |
CGAAG*CGUAG | 1 |
UCAGG*CGCAG | 1 |
UGAGG*CGCAG | 1 |
CGAGG*CGUAG | 1 |
UGAAG*CGUAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAA*GUA | 4 |
GAA*GUA | 3 |
GAG*GUA | 3 |
GAG*GCA | 2 |
CAA*GUA | 2 |
CAA*GUC | 1 |
CAG*GCA | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_24982.5 | Only in the parent motif |
---|---|---|---|
IL_24982.4 Compare | IL_1S72_055, IL_3U5F_053, IL_2QBG_052, IL_2QBG_058, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_1S72_023, IL_1FJG_023, IL_3V2F_050, IL_2AW7_030, IL_2QWY_004, IL_4IOA_051, IL_4IOA_026 | IL_4BPP_035, IL_4BPP_049 | IL_2XZM_049, IL_2XZM_035 |
Children motifs
Child motif | Common motif instances | Only in IL_24982.5 | Only in the child motif |
---|---|---|---|
IL_24982.6 Compare | IL_1S72_055, IL_3U5F_053, IL_2QBG_052, IL_2QBG_058, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_4BPP_035, IL_1FJG_023, IL_1S72_023, IL_4BPP_049, IL_2AW7_030, IL_2QWY_004, IL_4IOA_051, IL_4IOA_026 | IL_3V2F_050 | IL_4NVV_052 |
- Annotations
-
- (10)
- tSH-tHW-tHS (H) (4)
- 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)
- tSH-tHW-tHS (1)
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.36 | Max 0.77
Coloring options: