#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-93-84-75-67-8
1 IL_4IOA_0264IOA0.590505x5 Sarcin-Ricin with intercalated A; G-bulgeX LSU rRNAC927G928A929A930G931*U871G872U873A874G875cWWtSHtHWcWWncSH
2 IL_2QBG_0582QBG0.50620B23S rRNAU1513G1514A1515G1516G1517*U1474G1475U1476A1477G1478cWWtSHtHWcWW
3 IL_2QWY_0042QWY0.53430BSAM-II riboswitchA46A47A48A49G50*C16G17U18A19U20cWWtSHtHWcWW
4 IL_1S72_0231S720.25220tSH-tHW-tHS (H)0 LSU rRNAC719G720A721G722G723*C705G706C707A708G709cWWtSHtHWtHScWW
5 IL_1S72_0551S720.28930tSH-tHW-tHS (H)0 LSU rRNAU1639C1640A1641A1642C1643*G1542G1543U1544C1545G1546cWWtSHtHWtHScWW
6 IL_2AW7_0402AW70.19300A16S ribosomal RNAC779A780A781A782C783*G799G800U801A802G803cWWtSHtHWtHScWW
7 IL_1FJG_0331FJG0.15850tSH-tHW-tHS (H)A SSU rRNAC779A780A781A782C783*G799G800U801A802G803cWWtSHtHWtHScWW
8 IL_4BPP_0494BPP0.09530A18S RRNAC968A969A970A971G972*C988G989U990A991G992cWWtSHtHWtHScWW
9 IL_3U5F_0533U5F0.00000618S rRNAC990G991A992A993G994*C1010G1011U1012A1013G1014cWWtSHtHWtHScWW
10 IL_3U5F_0353U5F0.15890618S rRNAU968C969A970A971G972*C627G628U629A630G631cWWtSHtHWtHScWW
11 IL_4BPP_0354BPP0.18210A18S RRNAU946C947A948A949G950*C621G622U623A624G625cWWtSHtHWtHScWW
12 IL_1FJG_0231FJG0.23340tSH-tHW-tHS (H)A SSU rRNAU757G758A759G760G761*U580G581U582A583G584cWWtSHtHWcWW
13 IL_2AW7_0302AW70.20050A16S ribosomal RNAU757C758A759G760G761*C580G581C582A583G584cWWtSHtHWtHScWW
14 IL_4IOA_0514IOA0.28770tSH-tHW-tHSX LSU rRNAU1370G1371A1372G1373G1374*C1383G1384C1385A1386G1387cWWtSHtHWntHScWWncSH
15 IL_2QBG_0522QBG0.24290B23S rRNAC1357G1358A1359G1360G1361*C1370G1371U1372A1373G1374cWWtSHtHWtHScWW
16 IL_4NVV_0524NVV0.49130A23S Ribosomal RNAU1403G1404A1405A1406G1407*C1416G1417U1418A1419G1420cWWtSHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGAGG*UGUAG2
CAAAC*GGUAG2
UCAAG*CGUAG2
CGAAG*UGUAG1
AAAAG*CGUAU1
CGAGG*CGCAG1
UCAAC*GGUCG1
CAAAG*CGUAG1
CGAAG*CGUAG1
UCAGG*CGCAG1
UGAGG*CGCAG1
CGAGG*CGUAG1
UGAAG*CGUAG1
Non-Watson-Crick part of the motif
SequenceCounts
AAA*GUA4
GAA*GUA3
GAG*GUA3
GAG*GCA2
CAA*GUA2
CAA*GUC1
CAG*GCA1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_24982.6Only in the child motif
IL_24982.7
Compare
IL_1S72_055, IL_3U5F_053, IL_4NVV_052, IL_2QBG_058, IL_2AW7_040, IL_1FJG_033, IL_3U5F_035, IL_4BPP_035, IL_1FJG_023, IL_2QBG_052, IL_1S72_023, IL_4BPP_049, IL_2AW7_030, IL_2QWY_004, IL_4IOA_051, IL_4IOA_026IL_4CUX_050
Annotations
  • (10)
  • tSH-tHW-tHS (H) (4)
  • 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)
  • tSH-tHW-tHS (1)
  • Basepair signature
    cWW-tSH-tHW-tHS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.36 | Max 0.76
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