Motif IL_25228.1 Version IL_25228.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-3 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBZ_004 | 2QBZ | 0.0000 | 0 | X | C | 33 | U | 34 | C | 35 | C | 36 | * | G | 149 | U | 150 | G | 151 | cWW | cSH | cwW | cWW | ||
| 2 | IL_1S72_003 | 1S72 | 0.2536 | 0 | Major groove platform with extra cWW (H) | 0 | C | 440 | A | 441 | A | 442 | C | 443 | * | G | 39 | C | 40 | G | 41 | cWW | cSH | cWWa | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCC*GUG | 1 |
| CAAC*GCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*U | 1 |
| AA*C | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_25228.1 | Only in the parent motif |
|---|---|---|---|
| IL_33923.2 Compare | IL_1S72_003, IL_2QBZ_004 | IL_2ZJR_018, IL_1S72_029, IL_3F1H_021, IL_3F1H_042, IL_2GDI_005, IL_1MMS_002, IL_2ZJR_039, IL_2GDI_001, IL_1MMS_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_25228.1 | Only in the child motif |
|---|---|---|---|
| IL_55938.1 Compare | IL_1S72_003, IL_2QBZ_004 | IL_4A1B_038, IL_1XJR_001, IL_2ZJR_018, IL_2ZJR_039, IL_3U5F_014, IL_2XZM_014, IL_3UXR_022, IL_3U5H_061, IL_3U5H_111, IL_1S72_082, IL_4A1B_109, IL_3U5H_033, IL_3P49_006, IL_3P49_009, IL_1MMS_002, IL_1S72_029, IL_3UXR_092, IL_1MMS_004 |
- Annotations
-
- Major groove platform with extra cWW (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.25 | Avg 0.13 | Max 0.25
Coloring options: