#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-32-63-64-5
1 IL_2ZJR_0392ZJR0.60841X LSU rRNAG1098G1100U1101G1102*C1111U1112C1113cWWcWwcWW
2 IL_2ZJR_0182ZJR0.56290Major groove platform with extra cWW (H)X LSU rRNAG751G752U753G754*C769U770C771cWWcSHcWwcWW
3 IL_2QBZ_0042QBZ0.28890XM-Box RNA, ykoK riboswitch aptamerC33U34C35C36*G149U150G151cWWcSHcwWcWW
4 IL_1S72_0031S720.21710Major groove platform with extra cWW (H)0 LSU rRNAC440A441A442C443*G39C40G41cWWcSHcWWancWWcWW
5 IL_1S72_0291S720.22960Major groove platform with extra cWW (H)0 LSU rRNAG830U831U832G833*C849U850C851cWWcSHcWwcWW
6 IL_1MMS_0021MMS0.00001Major groove platform with extra cWWC23S RIBOSOMAL RNAG1087G1089U1090G1091*C1100U1101C1102cWWcSHcWwcWW
7 IL_1MMS_0041MMS0.02041D23S RIBOSOMAL RNAG1087G1089U1090G1091*C1100U1101C1102cWWcSHcWwcWW
8 IL_2GDI_0052GDI0.28780YTPP riboswitchA45U46A47C48*G18G19U20cWWcWWcWW
9 IL_2GDI_0012GDI0.23870XTPP riboswitchA45U46A47C48*G18G19U20cWWcWWcWW
10 IL_3F1H_0213F1H0.83020A23S RRNAG738G739U740G741*C756U757C758cWWcSHntSHcWwcWW
11 IL_3F1H_0423F1H0.85421A23S RRNAG1087G1089U1090G1091*C1100U1101C1102cWWcSHcWwcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAGUG*CUC4
GGUG*CUC2
AUAC*GGU2
CUCC*GUG1
CAAC*GCG1
GUUG*CUC1
Non-Watson-Crick part of the motif
SequenceCounts
AGU*U4
GU*U2
UA*G2
UC*U1
AA*C1
UU*U1
Annotations
  • (7)
  • Major groove platform with extra cWW (H) (3)
  • Major groove platform with extra cWW (1)
  • Basepair signature
    Heat map statistics
    Min 0.02 | Avg 0.49 | Max 1.08
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