Motif IL_33923.2 Version IL_33923.2 of this group appears in releases 0.2 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-3 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_039 | 2ZJR | 0.6084 | 1 | X | G | 1098 | G | 1100 | U | 1101 | G | 1102 | * | C | 1111 | U | 1112 | C | 1113 | cWW | cWw | cWW | |||
| 2 | IL_2ZJR_018 | 2ZJR | 0.5629 | 0 | Major groove platform with extra cWW (H) | X | G | 751 | G | 752 | U | 753 | G | 754 | * | C | 769 | U | 770 | C | 771 | cWW | cSH | cWw | cWW | |
| 3 | IL_2QBZ_004 | 2QBZ | 0.2889 | 0 | X | C | 33 | U | 34 | C | 35 | C | 36 | * | G | 149 | U | 150 | G | 151 | cWW | cSH | cwW | cWW | ||
| 4 | IL_1S72_003 | 1S72 | 0.2171 | 0 | Major groove platform with extra cWW (H) | 0 | C | 440 | A | 441 | A | 442 | C | 443 | * | G | 39 | C | 40 | G | 41 | cWW | cSH | cWWa | ncWW | cWW |
| 5 | IL_1S72_029 | 1S72 | 0.2296 | 0 | Major groove platform with extra cWW (H) | 0 | G | 830 | U | 831 | U | 832 | G | 833 | * | C | 849 | U | 850 | C | 851 | cWW | cSH | cWw | cWW | |
| 6 | IL_1MMS_002 | 1MMS | 0.0000 | 1 | Major groove platform with extra cWW | C | G | 1087 | G | 1089 | U | 1090 | G | 1091 | * | C | 1100 | U | 1101 | C | 1102 | cWW | cSH | cWw | cWW | |
| 7 | IL_1MMS_004 | 1MMS | 0.0204 | 1 | D | G | 1087 | G | 1089 | U | 1090 | G | 1091 | * | C | 1100 | U | 1101 | C | 1102 | cWW | cSH | cWw | cWW | ||
| 8 | IL_2GDI_005 | 2GDI | 0.2878 | 0 | Y | A | 45 | U | 46 | A | 47 | C | 48 | * | G | 18 | G | 19 | U | 20 | cWW | cWW | cWW | |||
| 9 | IL_2GDI_001 | 2GDI | 0.2387 | 0 | X | A | 45 | U | 46 | A | 47 | C | 48 | * | G | 18 | G | 19 | U | 20 | cWW | cWW | cWW | |||
| 10 | IL_3F1H_021 | 3F1H | 0.8302 | 0 | A | G | 738 | G | 739 | U | 740 | G | 741 | * | C | 756 | U | 757 | C | 758 | cWW | cSH | ntSH | cWw | cWW | |
| 11 | IL_3F1H_042 | 3F1H | 0.8542 | 1 | A | G | 1087 | G | 1089 | U | 1090 | G | 1091 | * | C | 1100 | U | 1101 | C | 1102 | cWW | cSH | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGUG*CUC | 4 |
| GGUG*CUC | 2 |
| AUAC*GGU | 2 |
| CUCC*GUG | 1 |
| CAAC*GCG | 1 |
| GUUG*CUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGU*U | 4 |
| GU*U | 2 |
| UA*G | 2 |
| UC*U | 1 |
| AA*C | 1 |
| UU*U | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_33923.2 | Only in the parent motif |
|---|---|---|---|
| IL_33923.1 Compare | IL_2ZJR_018, IL_1S72_029, IL_3F1H_021, IL_1S72_003, IL_2QBZ_004, IL_3F1H_042, IL_1MMS_002, IL_2ZJR_039, IL_1MMS_004 | IL_2GDI_005, IL_2GDI_001 | IL_3F1H_003 |
| IL_13128.1 Compare | IL_2GDI_005, IL_2GDI_001 | IL_2ZJR_018, IL_2ZJR_039, IL_2QBZ_004, IL_1S72_003, IL_3F1H_021, IL_3F1H_042, IL_1MMS_002, IL_1S72_029, IL_1MMS_004 | IL_2ZJR_103 |
Children motifs
- Annotations
-
- (7)
- Major groove platform with extra cWW (H) (3)
- Major groove platform with extra cWW (1)
- Basepair signature
- Heat map statistics
- Min 0.02 | Avg 0.49 | Max 1.08
Coloring options: