Motif IL_25230.3 Version IL_25230.3 of this group appears in releases 1.1 to 1.13

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	break		10		11		12		13		14		15		16		17		18	1-18	2-17	3-16	4-15	6-13	7-12	8-11	9-10
1	IL_364D_003	364D	0.2103	0	Bacterial 5S Loop E	C+B	RNA (31-mer)	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	*	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	cWW	tSH	ntHW	cBW	ntWH	tWH	tHS	cWW
2	IL_1FEU_001	1FEU	0.1243	0	Bacterial 5S Loop E	B+C	19 NT FRAGMENT OF 5S RRNA + 21 NT FRAGMENT OF 5S RRNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	*	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	cWW	tSH	tHW	ncBW	cWB	tWH	tHS	cWW
3	IL_1DFU_001	1DFU	0.0000	0	Bacterial 5S Loop E	N+M	5S RRNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	*	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	cWW	tSH	tHW	cBW	cWB	tWH	tHS	cWW
4	IL_2QBG_005	2QBG	0.1187	0		A	5S rRNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	*	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	cWW	tSH	tHW	cBW	cWB	tWH	tHS	cWW
5	IL_3V2F_111	3V2F	0.1789	0		B	5S Ribosomal RNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	C	79	*	G	98	G	99	A	100	G	101	A	102	G	103	U	104	A	105	G	106	cWW	tSH	tHW	ncBW	cWB	tWH	tHS	cWW
6	IL_4IOA_108	4IOA	0.1900	0	Bacterial 5S Loop E	Y	5S rRNA	C	73	A	74	A	75	U	76	G	77	A	78	U	79	A	80	C	81	*	G	100	A	101	A	102	A	103	A	104	G	105	U	106	C	107	G	108	cWW	tSH	tHW	cBW	ncWB	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAUGGUAG*CGAGAGUAG	3
CGAGAGUAG*CGAUGGUAG	1
CGAUGGUAC*GGAGAGUAG	1
CAAUGAUAC*GAAAAGUCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAUGGUA*GAGAGUA	4
GAGAGUA*GAUGGUA	1
AAUGAUA*AAAAGUC	1

Release history

Release	1.1	1.2	1.3	1.4	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13
Date	2013-04-08	2013-05-04	2013-06-01	2013-07-01	2013-08-03	2013-08-31	2013-09-28	2013-11-05	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_25230.3	Only in the parent motif
IL_25230.2 Compare	IL_3V2F_111, IL_1DFU_001, IL_2QBG_005, IL_364D_003, IL_1FEU_001	IL_4IOA_108	IL_2ZJR_106

Children motifs

Child motif	Common motif instances	Only in IL_25230.3	Only in the child motif
IL_25230.4 Compare	IL_1DFU_001, IL_4IOA_108, IL_2QBG_005, IL_364D_003, IL_1FEU_001	IL_3V2F_111	IL_4NVV_111

Annotations: Bacterial 5S Loop E (4)
Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW
Heat map statistics: Min 0.10 | Avg 0.16 | Max 0.24

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Coloring options: Nucleotide numbers

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