Motif IL_25300.2 Version IL_25300.2 of this group appears in releases 1.9 to 1.11
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4A1B_032 | 4A1B | 0.5397 | 1 | 1 | 26S RRNA | G | 800 | U | 802 | * | A | 779 | C | 780 | cWW | cWW | |
2 | IL_2QBG_032 | 2QBG | 0.3743 | 1 | B | 23S rRNA | U | 913 | C | 915 | * | G | 862 | A | 863 | cWW | cWW | |
3 | IL_1KXK_001 | 1KXK | 0.0000 | 2 | A | ai5g group II Self-splicing intron | U | 8 | C | 11 | * | G | 61 | G | 62 | cWW | cWW | |
4 | IL_3V2F_107 | 3V2F | 0.3968 | 1 | B | 5S Ribosomal RNA | C | 65 | G | 67 | * | C | 17 | G | 18 | cWW | cWW | |
5 | IL_2OZB_001 | 2OZB | 0.4859 | 1 | Single bulged A | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | U | 24 | G | 26 | * | C | 47 | G | 48 | cWW | cWW |
6 | IL_3U5H_046 | 3U5H | 0.5186 | 2 | 5 | 25S rRNA | U | 1015 | G | 1018 | * | U | 1034 | G | 1035 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUU*AC | 1 |
UGC*GA | 1 |
UAUC*GG | 1 |
CG*CAG | 1 |
UAG*CG | 1 |
UCCG*UG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
U* | 1 |
G* | 1 |
AU* | 1 |
*A | 1 |
A* | 1 |
CC* | 1 |
Release history
Release | 1.9 | 1.10 | 1.11 |
---|---|---|---|
Date | 2013-12-07 | 2014-01-04 | 2014-02-01 |
Status | Updated, 2 parents | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_25300.2 | Only in the parent motif |
---|---|---|---|
IL_25300.1 Compare | IL_2OZB_001, IL_1KXK_001, IL_4A1B_032, IL_2QBG_032, IL_3U5H_046 | IL_3V2F_107 | |
IL_28947.1 Compare | IL_3V2F_107 | IL_2OZB_001, IL_1KXK_001, IL_4A1B_032, IL_3U5H_046, IL_2QBG_032 | IL_2QBG_086, IL_2NZ4_007, IL_4IOA_067, IL_1S72_042, IL_1U9S_008, IL_387D_001, IL_2QBG_060, IL_3U5H_063, IL_1FJG_005, IL_1S72_022, IL_1XOK_001, IL_4A1B_063, IL_1XOK_002, IL_3U5H_019, IL_1S72_099, IL_3U5H_137, IL_4FAW_014, IL_3V2F_069, IL_2AW7_005, IL_3V2F_059 |
Children motifs
Child motif | Common motif instances | Only in IL_25300.2 | Only in the child motif |
---|---|---|---|
IL_25300.3 Compare | IL_2QBG_032, IL_2OZB_001, IL_1KXK_001, IL_4A1B_032, IL_3V2F_107, IL_3U5H_046 | IL_4IOA_024 |
- Annotations
-
- (5)
- Single bulged A (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.32 | Avg 0.45 | Max 0.89
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