Motif IL_26321.1 Version IL_26321.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4QK8_001 | 4QK8 | 0.1466 | 0 | A | C-di-AMP riboswitch | G | 26 | G | 27 | A | 28 | A | 29 | C | 30 | C | 31 | * | G | 94 | C | 95 | U | 96 | A | 97 | A | 98 | C | 99 | cWW | tSH | ncBW | cWW | ||
| 2 | IL_4QLM_002 | 4QLM | 0.1164 | 0 | A | cyclic di-AMP riboswitch | G | 27 | G | 28 | A | 29 | C | 30 | C | 31 | C | 32 | * | G | 96 | C | 97 | U | 98 | A | 99 | A | 100 | C | 101 | cWW | tSH | ncBW | cWW | ||
| 3 | IL_4QK9_001 | 4QK9 | 0.0000 | 0 | A | C-di-AMP riboswitch | G | 29 | G | 30 | A | 31 | C | 32 | C | 33 | C | 34 | * | G | 98 | C | 99 | U | 100 | A | 101 | A | 102 | C | 103 | cWW | tSH | ncBW | cWW | ||
| 4 | IL_3B5F_001 | 3B5F | 0.8318 | 0 | A+B | Loop A Substrate strand + 29-mer Loop A and Loop B Ribozyme strand | C | 4 | A | 5 | G | 6 | U | 7 | C | 8 | C | 9 | * | G | 6 | A | 7 | G | 8 | A | 9 | A | 10 | G | 11 | cWW | tSH | tHS | ncWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGACCC*GCUAAC | 2 |
| GGAACC*GCUAAC | 1 |
| CAGUCC*GAGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACC*CUAA | 2 |
| GAAC*CUAA | 1 |
| AGUC*AGAA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_26321.1 | Only in the parent motif |
|---|---|---|---|
| IL_37171.1 Compare | IL_3B5F_001 | IL_4QK9_001, IL_4QK8_001, IL_4QLM_002 | IL_4NVV_033, IL_3U5F_038 |
Children motifs
| Child motif | Common motif instances | Only in IL_26321.1 | Only in the child motif |
|---|---|---|---|
| IL_26321.2 Compare | IL_4QK9_001, IL_4QK8_001, IL_4QLM_002, IL_3B5F_001 | IL_4A1B_017, IL_4CUX_035 |
- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-R-tHS-L-bif-cWW
- Heat map statistics
- Min 0.12 | Avg 0.37 | Max 0.88
Coloring options: