Motif IL_26321.2 Version IL_26321.2 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10		11		12	1-12	2-10	2-11	4-9	5-8	6-7
1	IL_4QK8_001	4QK8	0.1466	A	C-di-AMP riboswitch	G	26	G	27	A	28	A	29	C	30	C	31	*	G	94	C	95	U	96	A	97	A	98	C	99	cWW		tSH		ncBW	cWW
2	IL_4QLM_002	4QLM	0.1164	A	cyclic di-AMP riboswitch	G	27	G	28	A	29	C	30	C	31	C	32	*	G	96	C	97	U	98	A	99	A	100	C	101	cWW		tSH		ncBW	cWW
3	IL_4QK9_001	4QK9	0.0000	A	C-di-AMP riboswitch	G	29	G	30	A	31	C	32	C	33	C	34	*	G	98	C	99	U	100	A	101	A	102	C	103	cWW		tSH		ncBW	cWW
4	IL_4CUX_035	4CUX	0.5759	2	18S RRNA	C	627	G	628	U	629	A	630	G	631	U	632	*	A	967	U	968	C	969	A	970	A	971	G	972			ntSH			cWW
5	IL_4A1B_017	4A1B	0.8008	1	26S RRNA	C	516	A	517	G	518	A	519	A	520	C	521	*	G	457	G	458	G	459	A	460	A	461	G	462	cWW				ntHS	cWW
6	IL_3B5F_001	3B5F	0.8318	A+B	Loop A Substrate strand + 29-mer Loop A and Loop B Ribozyme strand	C	4	A	5	G	6	U	7	C	8	C	9	*	G	6	A	7	G	8	A	9	A	10	G	11	cWW	tSH		tHS	ncWWa	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGACCC*GCUAAC	2
GGAACC*GCUAAC	1
CGUAGU*AUCAAG	1
CAGAAC*GGGAAG	1
CAGUCC*GAGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GACC*CUAA	2
GAAC*CUAA	1
GUAG*UCAA	1
AGAA*GGAA	1
AGUC*AGAA	1

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_26321.2	Only in the parent motif
IL_26321.1 Compare	IL_4QK9_001, IL_4QK8_001, IL_4QLM_002, IL_3B5F_001	IL_4A1B_017, IL_4CUX_035
IL_65542.1 Compare	IL_4A1B_017, IL_4CUX_035	IL_4QK9_001, IL_4QK8_001, IL_4QLM_002, IL_3B5F_001	IL_2PXV_002, IL_1VWW_084, IL_1DUH_002, IL_1LNT_002, IL_1DUH_004, IL_1VX2_032, IL_2XXA_015, IL_1MFQ_007

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-tSH-R-tHS-tHS-bif-cWW
Heat map statistics: Min 0.12 | Avg 0.50 | Max 0.88

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Coloring options: Nucleotide numbers

Motif IL_26321.2 Version IL_26321.2 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_26321.2 Version IL_26321.2 of this group appears in releases 1.18 to 1.18

Download

Csv

Json