Motif IL_26321.2 Version IL_26321.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4QK8_001 | 4QK8 | 0.1466 | 0 | A | cyclic di-AMP riboswitch | G | 26 | G | 27 | A | 28 | A | 29 | C | 30 | C | 31 | * | G | 94 | C | 95 | U | 96 | A | 97 | A | 98 | C | 99 | cWW | tSH | ncBW | cWW | ||
| 2 | IL_4QLM_002 | 4QLM | 0.1164 | 0 | A | cyclic di-AMP riboswitch | G | 27 | G | 28 | A | 29 | C | 30 | C | 31 | C | 32 | * | G | 96 | C | 97 | U | 98 | A | 99 | A | 100 | C | 101 | cWW | tSH | ncBW | cWW | ||
| 3 | IL_4QK9_001 | 4QK9 | 0.0000 | 0 | A | cyclic di-AMP riboswitch | G | 29 | G | 30 | A | 31 | C | 32 | C | 33 | C | 34 | * | G | 98 | C | 99 | U | 100 | A | 101 | A | 102 | C | 103 | cWW | tSH | ncBW | cWW | ||
| 4 | IL_4CUX_035 | 4CUX | 0.5759 | 0 | 2 | SSU rRNA | C | 627 | G | 628 | U | 629 | A | 630 | G | 631 | U | 632 | * | A | 967 | U | 968 | C | 969 | A | 970 | A | 971 | G | 972 | ntSH | cWW | ||||
| 5 | IL_4A1B_017 | 4A1B | 0.8008 | 0 | 1 | LSU rRNA | C | 516 | A | 517 | G | 518 | A | 519 | A | 520 | C | 521 | * | G | 457 | G | 458 | G | 459 | A | 460 | A | 461 | G | 462 | cWW | ntHS | cWW | |||
| 6 | IL_3B5F_001 | 3B5F | 0.8318 | 0 | A+B | Loop A Substrate strand + 29-mer Loop A and Loop B Ribozyme strand | C | 4 | A | 5 | G | 6 | U | 7 | C | 8 | C | 9 | * | G | 6 | A | 7 | G | 8 | A | 9 | A | 10 | G | 11 | cWW | tSH | tHS | ncWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGACCC*GCUAAC | 2 |
| GGAACC*GCUAAC | 1 |
| CGUAGU*AUCAAG | 1 |
| CAGAAC*GGGAAG | 1 |
| CAGUCC*GAGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACC*CUAA | 2 |
| GAAC*CUAA | 1 |
| GUAG*UCAA | 1 |
| AGAA*GGAA | 1 |
| AGUC*AGAA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_26321.2 | Only in the parent motif |
|---|---|---|---|
| IL_26321.1 Compare | IL_4QK9_001, IL_4QK8_001, IL_4QLM_002, IL_3B5F_001 | IL_4A1B_017, IL_4CUX_035 | |
| IL_65542.1 Compare | IL_4A1B_017, IL_4CUX_035 | IL_4QK9_001, IL_4QK8_001, IL_4QLM_002, IL_3B5F_001 | IL_2PXV_002, IL_1VWW_084, IL_1DUH_002, IL_1LNT_002, IL_1DUH_004, IL_1VX2_032, IL_2XXA_015, IL_1MFQ_007 |
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-tSH-R-tHS-tHS-bif-cWW
- Heat map statistics
- Min 0.12 | Avg 0.50 | Max 0.88
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