#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 11 121-122-102-113-43-93-104-95-86-7
1 IL_3B5F_0013B5F0.82580A+BLoop A Substrate strand + 29-mer Loop A and Loop B Ribozyme strandC4A5G6U7C8C9*G6A7G8A9A10G11cWWtSHtHSncWWacWW
2 IL_4NVV_0334NVV0.00000A23S Ribosomal RNAG922C923U924A925G926G927*C943C944A945A946A947C948cWWcWWncSsncWWtSHncWW
3 IL_3U5F_0383U5F0.49390618S rRNAG730C731G732A733A734C735*G703C704U705A706A707C708cWWcWWntSHncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAGUCC*GAGAAG1
GCUAGG*CCAAAC1
GCGAAC*GCUAAC1
Non-Watson-Crick part of the motif
SequenceCounts
AGUC*AGAA1
CUAG*CAAA1
CGAA*CUAA1

Release history

Release1.141.15
Date2014-04-272014-06-20
StatusNew id, 2 parentsExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_37171.1Only in the parent motif
IL_83856.1
Compare
IL_3U5F_038IL_4NVV_033, IL_3B5F_001
IL_80494.2
Compare
IL_3B5F_001IL_4NVV_033, IL_3U5F_038IL_3P49_012, IL_1S72_057

Children motifs

Child motifCommon motif instancesOnly in IL_37171.1Only in the child motif
IL_44977.1
Compare
IL_3U5F_038IL_4NVV_033, IL_3B5F_001IL_4A1B_025
IL_26321.1
Compare
IL_3B5F_001IL_4NVV_033, IL_3U5F_038IL_4QK9_001, IL_4QK8_001, IL_4QLM_002
Annotations
  • (3)
  • Basepair signature
    cWW-cWW-tSH-L-R-cWW-cWW
    Heat map statistics
    Min 0.49 | Avg 0.52 | Max 1.04
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