#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2break 3 4 51-52-3
1 IL_1FJG_0121FJG0.39201A SSU rRNAA274G275*U249A250U252cWWcWW
2 IL_3U5F_0203U5F0.00003618S rRNAU345G346*U318U319A323cWWcWW
3 IL_4IOA_0234IOA0.68400X LSU rRNAU860G861*U942U943A944cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AG*UAGU1
UG*UUUCGA1
UG*UUA1
Non-Watson-Crick part of the motif
SequenceCounts
*AG1
*UUCG1
*U1

Release history

Release1.121.131.14
Date2014-03-012014-03-292014-04-27
StatusUpdated, 2 parentsExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_80348.3Only in the parent motif
IL_80348.2
Compare
IL_4IOA_023, IL_3U5F_020IL_1FJG_012
IL_96206.2
Compare
IL_1FJG_012IL_4IOA_023, IL_3U5F_020IL_1S72_017, IL_1XJR_004

Children motifs

Child motifCommon motif instancesOnly in IL_80348.3Only in the child motif
IL_26910.1
Compare
IL_1FJG_012IL_4IOA_023, IL_3U5F_020IL_1S72_017, IL_1XJR_004
IL_45592.1
Compare
IL_4IOA_023IL_3U5F_020, IL_1FJG_012IL_4CUX_051, IL_3U5F_054
IL_57359.1
Compare
IL_3U5F_020IL_4IOA_023, IL_1FJG_012
Annotations
  • (3)
  • Basepair signature
    cWW-R-cWW
    Heat map statistics
    Min 0.39 | Avg 0.42 | Max 0.82
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