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Motif IL_28037.1 Version IL_28037.1 of this group appears in releases 3.95 to 3.95

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-53-4
1 IL_8CRE_0648CRE0.47621Isolated non-canonical cWW pair1 LSU rRNAC1406U1407G1408*U1394U1396G1397cWWcwWcWW
2 IL_8P9A_4718P9A0.49062Isolated non-canonical cWW pairsR SSU rRNAG1352U1353G1354*U1369U1372C1373cWWcwWncWW
3 IL_5B2P_0025B2P0.48851Isolated non-canonical cWW pairBGuide RNAC44U45C46*G28U30G31cWWcwWcWW
4 IL_8P9A_4158P9A0.28851Isolated non-canonical cWW pairsR SSU rRNAA850U851C852*G819U821U822cWWcwWcWW
5 IL_4WF9_0184WF90.32110Isolated non-canonical cWW pairX LSU rRNAU638U639G640*U705U706G707cWWcWW
6 IL_4KYY_0024KYY0.33720Isolated non-canonical cWW pairA+BRNA 17-merU8U9G10*U8U9G10cWWcWW
7 IL_8CRE_4648CRE0.32890Isolated non-canonical cWW pairCM SSU rRNAC1496U1497G1498*U1483U1484G1485cWWcWW
8 IL_7A0S_1077A0S0.32530Isolated non-canonical cWW pairY 5S rRNAC97C98G99*U82C83G84cWWncWBcWW
9 IL_8CRE_4738CRE0.25850Isolated non-canonical cWW pairCM SSU rRNAU1721U1722G1723*U1652U1653A1654cWWncWW
10 IL_8P9A_4598P9A0.29760Isolated non-canonical cWW pairsR SSU rRNAU1734U1735G1736*U1665U1666A1667cWWcWW
11 IL_4Y1M_0054Y1M0.18430Isolated non-canonical cWW pairBE. coli yybP-ykoY riboswitchU4U5U6*A103U104A105cWWncwWcWW
12 IL_8P9A_2458P9A0.22450Isolated non-canonical cWW pairAR LSU rRNAA628U629A630*U429U430U431cWWcWW
13 IL_7A0S_0117A0S0.21860Isolated non-canonical cWW pairX LSU rRNAC573C574U575*A584U585G586cWWcWWcWW
14 IL_5J7L_2575J7L0.18450Isolated non-canonical cWW pairDA LSU rRNAC564C565U566*A575U576G577cWWcWWcWW
15 IL_4WF9_0174WF90.14200Isolated non-canonical cWW pairX LSU rRNAC607C608U609*A618U619G620cWWcWWcWW
16 IL_9DFE_0139DFE0.16370Isolated non-canonical cWW pair1A LSU rRNAC564C565U566*A575U576G577cWWcWWcWW
17 IL_7QQP_0077QQP0.22190Isolated non-canonical cWW pairA+C tracrRNA + AAVS1 off-target3 target strandA7C8U9*DA12DC13DT14cWWncWwncWW
18 IL_7A0S_0787A0S0.22040Isolated non-canonical cWW pairX LSU rRNAC2068U2069G2070*U2211U2212G2213cWWcwWcWW
19 IL_9DFE_0839DFE0.22770Isolated non-canonical cWW pair1A LSU rRNAC2085U2086G2087*U2232U2233G2234cWWcwWcWW
20 IL_5J7L_3265J7L0.19990Isolated non-canonical cWW pairDA LSU rRNAC2232U2233G2234*U2085U2086G2087cWWcwWcWW
21 IL_8P9A_4138P9A0.24480Isolated non-canonical cWW pairsR SSU rRNAA799U800G801*U748U749U750cWWcwWcWW
22 IL_8CRE_4298CRE0.21270Isolated non-canonical cWW pairCM SSU rRNAA783U784G785*U733U734U735cWWcwWcWW
23 IL_8P9A_3508P9A0.18970Isolated non-canonical cWW pairAR LSU rRNAA3168U3169A3170*U3280U3281U3282cWWcwWcWW
24 IL_4P3U_0074P3U0.16640Isolated non-canonical cWW pairD+CRNA (23-mer)G42U43C44*G5U6C7cWWncwWcWW
25 IL_5B2P_0015B2P0.12370Isolated non-canonical cWW pairBGuide RNAU24U25C26*G48U49A50cWWcwWcWW
26 IL_4KYY_0034KYY0.08650Isolated non-canonical cWW pairA+BRNA 17-merA11U12C13*G5U6U7cWWcwWcWW
27 IL_2O3Y_0042O3Y0.07890Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
28 IL_3BNN_0083BNN0.00000Isolated non-canonical cWW pairC+DA site of human ribosomeG17U18C19*G3U4C5cWWcwWcWW
29 IL_3BNN_0053BNN0.09320Isolated non-canonical cWW pairC+DA site of human ribosomeG3U4C5*G17U18C19cWWcwWcWW
30 IL_3BNR_0123BNR0.07510Isolated non-canonical cWW pairC+DA site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain threeG19U20C21*G3U4C5cWWcwWcWW
31 IL_4K31_0014K310.10750Isolated non-canonical cWW pairB+CRNA (23-mer)G5U6C7*G19U20C21cWWcwWcWW
32 IL_4K31_0044K310.10720Isolated non-canonical cWW pairC+BRNA (23-mer)G5U6C7*G19U20C21cWWcwWcWW
33 IL_4KYY_0014KYY0.11050Isolated non-canonical cWW pairB+ARNA 17-merA11U12C13*G5U6U7cWWcwWcWW
34 IL_2OE8_0012OE80.09130Isolated non-canonical cWW pairB+ARNA (17-mer)G1494U1495C1496*G1405U1406C1407cWWcwWcWW
35 IL_2OE5_0012OE50.10840Isolated non-canonical cWW pairB+ARNA (17-mer)G1494U1495C1496*G1405U1406C1407cWWcwWcWW
36 IL_3TD0_0063TD00.11200Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
37 IL_2O3Y_0012O3Y0.09790Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcwWcWW
38 IL_5ZTM_0025ZTM0.11860Isolated non-canonical cWW pairCnon-coding mRNA sequence roX2A123U124C125*G157U158U159cWWcwWcWW
39 IL_3U4M_0013U4M0.11950Isolated non-canonical cWW pairB LSU rRNAA2108U2109G2110*C2179U2180U2181cWWcwWcWW
40 IL_4JGN_0014JGN0.11860Isolated non-canonical cWW pairERNA (20-mer)C517||||4_555U518||||4_555G519||||4_555*C505U506G507cWWcwWcWW
41 IL_4P3U_0064P3U0.14330Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
42 IL_1MFQ_0021MFQ0.10690Isolated non-canonical cWW pairA SRP RNAA228U229C230*G120U121U122cWWcwWcWW
43 IL_8P9A_3438P9A0.13940Isolated non-canonical cWW pairAR LSU rRNAA3012U3013U3014*A3040U3041U3042cWWcwWcWW
44 IL_8CRE_1248CRE0.13660Isolated non-canonical cWW pair1 LSU rRNAA2984U2985U2986*A3012U3013U3014cWWcwWcWW
45 IL_5WTI_0025WTI0.14110Isolated non-canonical cWW pairBRNA (123-MER)G10U11C12*G18U19C20cWWcwWcWW
46 IL_4TS2_0044TS20.14610Isolated non-canonical cWW pairY+XSpinach aptamer RNA, bimolecular constructC77U78C79*G20U21G22cWWcwWcWW
47 IL_8CRE_0378CRE0.16480Isolated non-canonical cWW pair1 LSU rRNAA961U962A963*U950U951U952cWWcwWcWW
48 IL_8P9A_2628P9A0.15370Isolated non-canonical cWW pairAR LSU rRNAA965U966A967*U954U955U956cWWcwWcWW
49 IL_2O3V_0012O3V0.13400Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcwWcWW
50 IL_7XPL_0017XPL0.13600Isolated non-canonical cWW pairH+GBMG3 RNA strand BA6U7G8*C22U23U24cWWcwWcWW
51 IL_1U6B_0051U6B0.18650Isolated non-canonical cWW pairB197-MERA117U118G119*C100U101U102cWWcwWcWW
52 IL_2ET8_0042ET80.17340Isolated non-canonical cWW pairB+ARNA (22-mer)G27U28C29*G18U19C20cWWcwWcWW
53 IL_3BNR_0073BNR0.12280Isolated non-canonical cWW pairC+DA site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain threeG5U6C7*G17U18C19cWWcwWcWW
54 IL_7L0Z_0017L0Z0.15590Isolated non-canonical cWW pairGRNA (69-MER)G10U11G12*C58U59C60cWWcwWcWW
55 IL_3BNT_0013BNT0.16250Isolated non-canonical cWW pairAA site of human mitochondrial ribosomeG4U5C6*G18||||4_665U19||||4_665C20||||4_665cWWcwWcWW
56 IL_2O3V_0042O3V0.13900Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
57 IL_3TD0_0013TD00.14280Isolated non-canonical cWW pairB+ARNA (23-mer)G42U43C44*G5U6C7cWWncwWcWW
58 IL_4ZC7_0014ZC70.18740Isolated non-canonical cWW pairB+ARNA duplexG42U43C44*G5U6C7cWWncWwcWW
59 IL_8CRE_4048CRE0.16100Isolated non-canonical cWW pairCM SSU rRNAA255C256U257*A204U205U206cWWcWWcWW
60 IL_8P9A_3878P9A0.18710Isolated non-canonical cWW pairsR SSU rRNAA206U207U208*A257C258U259cWWcWWcWW
61 IL_6SX2_0016SX20.19650Isolated non-canonical cWW pairD+CRNA (19-mer)U9U10A11*U9U10A11cWWncwWcWW
62 IL_2O3X_0042O3X0.19590Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWcwWcWW
63 IL_4KNQ_0014KNQ0.17610Isolated non-canonical cWW pairBRNA (20-mer)C216||||4_555C217||||4_555G218||||4_555*C204C205G206cWWcWwcWW
64 IL_4V9F_0474V9F0.14590Isolated non-canonical cWW pair0 LSU rRNAG1349U1350G1351*C1303U1304C1305cWWcwWcWW
65 IL_5T3K_0025T3K0.16940Isolated non-canonical cWW pairA+BRNA (17-mer) + RNA (16-mer)G10U11C12*G2475B25C26cWWcwWcWW
66 IL_1T0E_0021T0E0.21700Isolated non-canonical cWW pairA+CRNA (18-mer) + RNA (17-mer)G10||AU11C12*G14U15C16cWWcwWcWW
67 IL_1ZX7_0061ZX70.16550Isolated non-canonical cWW pairE+FRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWcwWcWW
68 IL_8FEQ_0018FEQ0.17630Isolated non-canonical cWW pairAAARNA 16mer with two separated s(2)UG4SUR5A6*U11||||4_555SUR12||||4_555C13||||4_555cWWcwWcWW
69 IL_1L9A_0091L9A0.27100Isolated non-canonical cWW pairB SRP RNAA228U229C230*G120U121U122ncWWncwWcWW
70 IL_5J7L_2735J7L0.34610Isolated non-canonical cWW pairDA LSU rRNAU870U871U872*A905U906G907cWWcwWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUC*GUC23
AUC*GUU5
CUG*UUG4
AUA*UUU4
CCU*AUG4
AUG*CUU3
UUG*UUG2
UUG*UUA2
AUG*UUU2
AUU*AUU2
GUG*CUC2
CUG*UUUG1
GUG*UUAUC1
CUC*GUUG1
AUC*GUUU1
CCG*UCG1
UUU*AUA1
ACU*ACT1
UUC*GUA1
CUG*CUG1
CUC*GUG1
ACU*AUU1
AUU*ACU1
UUA*UUA1
CCG*CCG1
GUC*GC1
G(SUR)A*U(SUR)C1
UUU*AUG1
Non-Watson-Crick part of the motif
SequenceCounts
U*U55
C*U5
U*UU3
C*C3
U*UAU1
U*C1
U*(75B)1
(SUR)*(SUR)1

Release history

Release3.95
Date2025-03-26
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (70)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.01 | Avg 0.25 | Max 0.62
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