Motif IL_28037.1 Version IL_28037.1 of this group appears in releases 3.95 to 3.95
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8CRE_064 | 8CRE | 0.4762 | 1 | Isolated non-canonical cWW pair (H) | 1 | LSU rRNA | C | 1406 | U | 1407 | G | 1408 | * | U | 1394 | U | 1396 | G | 1397 | cWW | cwW | cWW |
2 | IL_8P9A_471 | 8P9A | 0.4906 | 2 | Isolated non-canonical cWW pair | sR | SSU rRNA | G | 1352 | U | 1353 | G | 1354 | * | U | 1369 | U | 1372 | C | 1373 | cWW | cwW | ncWW |
3 | IL_5B2P_002 | 5B2P | 0.4885 | 1 | Isolated non-canonical cWW pair | B | Guide RNA | C | 44 | U | 45 | C | 46 | * | G | 28 | U | 30 | G | 31 | cWW | cwW | cWW |
4 | IL_8P9A_415 | 8P9A | 0.2885 | 1 | Isolated non-canonical cWW pair | sR | SSU rRNA | A | 850 | U | 851 | C | 852 | * | G | 819 | U | 821 | U | 822 | cWW | cwW | cWW |
5 | IL_4WF9_018 | 4WF9 | 0.3211 | 0 | Isolated non-canonical cWW pair | X | LSU rRNA | U | 638 | U | 639 | G | 640 | * | U | 705 | U | 706 | G | 707 | cWW | cWW | |
6 | IL_4KYY_002 | 4KYY | 0.3372 | 0 | Isolated non-canonical cWW pair | A+B | RNA 17-mer | U | 8 | U | 9 | G | 10 | * | U | 8 | U | 9 | G | 10 | cWW | cWW | |
7 | IL_8CRE_464 | 8CRE | 0.3289 | 0 | Isolated non-canonical cWW pair (H) | CM | SSU rRNA | C | 1496 | U | 1497 | G | 1498 | * | U | 1483 | U | 1484 | G | 1485 | cWW | cWW | |
8 | IL_7A0S_107 | 7A0S | 0.3253 | 0 | Isolated non-canonical cWW pair | Y | 5S rRNA | C | 97 | C | 98 | G | 99 | * | U | 82 | C | 83 | G | 84 | cWW | ncWB | cWW |
9 | IL_8CRE_473 | 8CRE | 0.2585 | 0 | Isolated non-canonical cWW pair (H) | CM | SSU rRNA | U | 1721 | U | 1722 | G | 1723 | * | U | 1652 | U | 1653 | A | 1654 | cWW | ncWW | |
10 | IL_8P9A_459 | 8P9A | 0.2976 | 0 | Isolated non-canonical cWW pair | sR | SSU rRNA | U | 1734 | U | 1735 | G | 1736 | * | U | 1665 | U | 1666 | A | 1667 | cWW | cWW | |
11 | IL_4Y1M_005 | 4Y1M | 0.1843 | 0 | Isolated non-canonical cWW pair | B | E. coli yybP-ykoY riboswitch | U | 4 | U | 5 | U | 6 | * | A | 103 | U | 104 | A | 105 | cWW | ncwW | cWW |
12 | IL_8P9A_245 | 8P9A | 0.2245 | 0 | Isolated non-canonical cWW pair | AR | LSU rRNA | A | 628 | U | 629 | A | 630 | * | U | 429 | U | 430 | U | 431 | cWW | cWW | |
13 | IL_7A0S_011 | 7A0S | 0.2186 | 0 | Isolated non-canonical cWW pair | X | LSU rRNA | C | 573 | C | 574 | U | 575 | * | A | 584 | U | 585 | G | 586 | cWW | cWW | cWW |
14 | IL_5J7L_257 | 5J7L | 0.1845 | 0 | Isolated non-canonical cWW pair | DA | LSU rRNA | C | 564 | C | 565 | U | 566 | * | A | 575 | U | 576 | G | 577 | cWW | cWW | cWW |
15 | IL_4WF9_017 | 4WF9 | 0.1420 | 0 | Isolated non-canonical cWW pair | X | LSU rRNA | C | 607 | C | 608 | U | 609 | * | A | 618 | U | 619 | G | 620 | cWW | cWW | cWW |
16 | IL_9DFE_013 | 9DFE | 0.1637 | 0 | Isolated non-canonical cWW pair | 1A | LSU rRNA | C | 564 | C | 565 | U | 566 | * | A | 575 | U | 576 | G | 577 | cWW | cWW | cWW |
17 | IL_7QQP_007 | 7QQP | 0.2219 | 0 | A+C | tracrRNA + AAVS1 off-target3 target strand | A | 7 | C | 8 | U | 9 | * | DA | 12 | DC | 13 | DT | 14 | cWW | ncWw | ncWW | |
18 | IL_7A0S_078 | 7A0S | 0.2204 | 0 | Isolated non-canonical cWW pair | X | LSU rRNA | C | 2068 | U | 2069 | G | 2070 | * | U | 2211 | U | 2212 | G | 2213 | cWW | cwW | cWW |
19 | IL_9DFE_083 | 9DFE | 0.2277 | 0 | Isolated non-canonical cWW pair | 1A | LSU rRNA | C | 2085 | U | 2086 | G | 2087 | * | U | 2232 | U | 2233 | G | 2234 | cWW | cwW | cWW |
20 | IL_5J7L_326 | 5J7L | 0.1999 | 0 | Isolated non-canonical cWW pair | DA | LSU rRNA | C | 2232 | U | 2233 | G | 2234 | * | U | 2085 | U | 2086 | G | 2087 | cWW | cwW | cWW |
21 | IL_8P9A_413 | 8P9A | 0.2448 | 0 | Isolated non-canonical cWW pair | sR | SSU rRNA | A | 799 | U | 800 | G | 801 | * | U | 748 | U | 749 | U | 750 | cWW | cwW | cWW |
22 | IL_8CRE_429 | 8CRE | 0.2127 | 0 | Isolated non-canonical cWW pair (H) | CM | SSU rRNA | A | 783 | U | 784 | G | 785 | * | U | 733 | U | 734 | U | 735 | cWW | cwW | cWW |
23 | IL_8P9A_350 | 8P9A | 0.1897 | 0 | Isolated non-canonical cWW pair | AR | LSU rRNA | A | 3168 | U | 3169 | A | 3170 | * | U | 3280 | U | 3281 | U | 3282 | cWW | cwW | cWW |
24 | IL_4P3U_007 | 4P3U | 0.1664 | 0 | Isolated non-canonical cWW pair | D+C | RNA (23-mer) | G | 42 | U | 43 | C | 44 | * | G | 5 | U | 6 | C | 7 | cWW | ncwW | cWW |
25 | IL_5B2P_001 | 5B2P | 0.1237 | 0 | Isolated non-canonical cWW pair | B | Guide RNA | U | 24 | U | 25 | C | 26 | * | G | 48 | U | 49 | A | 50 | cWW | cwW | cWW |
26 | IL_4KYY_003 | 4KYY | 0.0865 | 0 | Isolated non-canonical cWW pair | A+B | RNA 17-mer | A | 11 | U | 12 | C | 13 | * | G | 5 | U | 6 | U | 7 | cWW | cwW | cWW |
27 | IL_2O3Y_004 | 2O3Y | 0.0789 | 0 | Isolated non-canonical cWW pair | B+A | RNA (23-mer) | G | 28 | U | 29 | C | 30 | * | G | 19 | U | 20 | C | 21 | cWW | cwW | cWW |
28 | IL_3BNN_008 | 3BNN | 0.0000 | 0 | Isolated non-canonical cWW pair | C+D | A site of human ribosome | G | 17 | U | 18 | C | 19 | * | G | 3 | U | 4 | C | 5 | cWW | cwW | cWW |
29 | IL_3BNN_005 | 3BNN | 0.0932 | 0 | Isolated non-canonical cWW pair | C+D | A site of human ribosome | G | 3 | U | 4 | C | 5 | * | G | 17 | U | 18 | C | 19 | cWW | cwW | cWW |
30 | IL_3BNR_012 | 3BNR | 0.0751 | 0 | Isolated non-canonical cWW pair | C+D | A site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain three | G | 19 | U | 20 | C | 21 | * | G | 3 | U | 4 | C | 5 | cWW | cwW | cWW |
31 | IL_4K31_001 | 4K31 | 0.1075 | 0 | Isolated non-canonical cWW pair | B+C | RNA (23-mer) | G | 5 | U | 6 | C | 7 | * | G | 19 | U | 20 | C | 21 | cWW | cwW | cWW |
32 | IL_4K31_004 | 4K31 | 0.1072 | 0 | Isolated non-canonical cWW pair | C+B | RNA (23-mer) | G | 5 | U | 6 | C | 7 | * | G | 19 | U | 20 | C | 21 | cWW | cwW | cWW |
33 | IL_4KYY_001 | 4KYY | 0.1105 | 0 | Isolated non-canonical cWW pair | B+A | RNA 17-mer | A | 11 | U | 12 | C | 13 | * | G | 5 | U | 6 | U | 7 | cWW | cwW | cWW |
34 | IL_2OE8_001 | 2OE8 | 0.0913 | 0 | Isolated non-canonical cWW pair | B+A | RNA (17-mer) | G | 1494 | U | 1495 | C | 1496 | * | G | 1405 | U | 1406 | C | 1407 | cWW | cwW | cWW |
35 | IL_2OE5_001 | 2OE5 | 0.1084 | 0 | Isolated non-canonical cWW pair | B+A | RNA (17-mer) | G | 1494 | U | 1495 | C | 1496 | * | G | 1405 | U | 1406 | C | 1407 | cWW | cwW | cWW |
36 | IL_3TD0_006 | 3TD0 | 0.1120 | 0 | Isolated non-canonical cWW pair | B+A | RNA (23-mer) | G | 28 | U | 29 | C | 30 | * | G | 19 | U | 20 | C | 21 | cWW | cwW | cWW |
37 | IL_2O3Y_001 | 2O3Y | 0.0979 | 0 | Isolated non-canonical cWW pair | A+B | RNA (23-mer) | G | 5 | U | 6 | C | 7 | * | G | 42 | U | 43 | C | 44 | cWW | cwW | cWW |
38 | IL_5ZTM_002 | 5ZTM | 0.1186 | 0 | Isolated non-canonical cWW pair | C | non-coding mRNA sequence roX2 | A | 123 | U | 124 | C | 125 | * | G | 157 | U | 158 | U | 159 | cWW | cwW | cWW |
39 | IL_3U4M_001 | 3U4M | 0.1195 | 0 | Isolated non-canonical cWW pair | B | LSU rRNA | A | 2108 | U | 2109 | G | 2110 | * | C | 2179 | U | 2180 | U | 2181 | cWW | cwW | cWW |
40 | IL_4JGN_001 | 4JGN | 0.1186 | 0 | Isolated non-canonical cWW pair | E | RNA (20-mer) | C | 517||||4_555 | U | 518||||4_555 | G | 519||||4_555 | * | C | 505 | U | 506 | G | 507 | cWW | cwW | cWW |
41 | IL_4P3U_006 | 4P3U | 0.1433 | 0 | Isolated non-canonical cWW pair | B+A | RNA (23-mer) | G | 28 | U | 29 | C | 30 | * | G | 19 | U | 20 | C | 21 | cWW | cwW | cWW |
42 | IL_1MFQ_002 | 1MFQ | 0.1069 | 0 | Isolated non-canonical cWW pair | A | SRP RNA | A | 228 | U | 229 | C | 230 | * | G | 120 | U | 121 | U | 122 | cWW | cwW | cWW |
43 | IL_8P9A_343 | 8P9A | 0.1394 | 0 | Isolated non-canonical cWW pair | AR | LSU rRNA | A | 3012 | U | 3013 | U | 3014 | * | A | 3040 | U | 3041 | U | 3042 | cWW | cwW | cWW |
44 | IL_8CRE_124 | 8CRE | 0.1366 | 0 | Isolated non-canonical cWW pair (H) | 1 | LSU rRNA | A | 2984 | U | 2985 | U | 2986 | * | A | 3012 | U | 3013 | U | 3014 | cWW | cwW | cWW |
45 | IL_5WTI_002 | 5WTI | 0.1411 | 0 | Isolated non-canonical cWW pair | B | RNA (123-MER) | G | 10 | U | 11 | C | 12 | * | G | 18 | U | 19 | C | 20 | cWW | cwW | cWW |
46 | IL_4TS2_004 | 4TS2 | 0.1461 | 0 | Isolated non-canonical cWW pair | Y+X | Spinach aptamer RNA, bimolecular construct | C | 77 | U | 78 | C | 79 | * | G | 20 | U | 21 | G | 22 | cWW | cwW | cWW |
47 | IL_8CRE_037 | 8CRE | 0.1648 | 0 | Isolated non-canonical cWW pair (H) | 1 | LSU rRNA | A | 961 | U | 962 | A | 963 | * | U | 950 | U | 951 | U | 952 | cWW | cwW | cWW |
48 | IL_8P9A_262 | 8P9A | 0.1537 | 0 | Isolated non-canonical cWW pair | AR | LSU rRNA | A | 965 | U | 966 | A | 967 | * | U | 954 | U | 955 | U | 956 | cWW | cwW | cWW |
49 | IL_2O3V_001 | 2O3V | 0.1340 | 0 | Isolated non-canonical cWW pair | A+B | RNA (23-mer) | G | 5 | U | 6 | C | 7 | * | G | 42 | U | 43 | C | 44 | cWW | cwW | cWW |
50 | IL_7XPL_001 | 7XPL | 0.1360 | 0 | Isolated non-canonical cWW pair | H+G | BMG3 RNA strand B | A | 6 | U | 7 | G | 8 | * | C | 22 | U | 23 | U | 24 | cWW | cwW | cWW |
51 | IL_1U6B_005 | 1U6B | 0.1865 | 0 | Isolated non-canonical cWW pair | B | 197-MER | A | 117 | U | 118 | G | 119 | * | C | 100 | U | 101 | U | 102 | cWW | cwW | cWW |
52 | IL_2ET8_004 | 2ET8 | 0.1734 | 0 | Isolated non-canonical cWW pair | B+A | RNA (22-mer) | G | 27 | U | 28 | C | 29 | * | G | 18 | U | 19 | C | 20 | cWW | cwW | cWW |
53 | IL_3BNR_007 | 3BNR | 0.1228 | 0 | Isolated non-canonical cWW pair | C+D | A site of human mitochondrial ribosome, chain one + A site of human mitochondrial ribosome, chain three | G | 5 | U | 6 | C | 7 | * | G | 17 | U | 18 | C | 19 | cWW | cwW | cWW |
54 | IL_7L0Z_001 | 7L0Z | 0.1559 | 0 | Isolated non-canonical cWW pair | G | RNA (69-MER) | G | 10 | U | 11 | G | 12 | * | C | 58 | U | 59 | C | 60 | cWW | cwW | cWW |
55 | IL_3BNT_001 | 3BNT | 0.1625 | 0 | Isolated non-canonical cWW pair | A | A site of human mitochondrial ribosome | G | 4 | U | 5 | C | 6 | * | G | 18||||4_665 | U | 19||||4_665 | C | 20||||4_665 | cWW | cwW | cWW |
56 | IL_2O3V_004 | 2O3V | 0.1390 | 0 | Isolated non-canonical cWW pair | B+A | RNA (23-mer) | G | 28 | U | 29 | C | 30 | * | G | 19 | U | 20 | C | 21 | cWW | cwW | cWW |
57 | IL_3TD0_001 | 3TD0 | 0.1428 | 0 | Isolated non-canonical cWW pair | B+A | RNA (23-mer) | G | 42 | U | 43 | C | 44 | * | G | 5 | U | 6 | C | 7 | cWW | ncwW | cWW |
58 | IL_4ZC7_001 | 4ZC7 | 0.1874 | 0 | Isolated non-canonical cWW pair | B+A | RNA duplex | G | 42 | U | 43 | C | 44 | * | G | 5 | U | 6 | C | 7 | cWW | ncWw | cWW |
59 | IL_8CRE_404 | 8CRE | 0.1610 | 0 | Isolated non-canonical cWW pair (H) | CM | SSU rRNA | A | 255 | C | 256 | U | 257 | * | A | 204 | U | 205 | U | 206 | cWW | cWW | cWW |
60 | IL_8P9A_387 | 8P9A | 0.1871 | 0 | Isolated non-canonical cWW pair | sR | SSU rRNA | A | 206 | U | 207 | U | 208 | * | A | 257 | C | 258 | U | 259 | cWW | cWW | cWW |
61 | IL_6SX2_001 | 6SX2 | 0.1965 | 0 | Isolated non-canonical cWW pair | D+C | RNA (19-mer) | U | 9 | U | 10 | A | 11 | * | U | 9 | U | 10 | A | 11 | cWW | ncwW | cWW |
62 | IL_2O3X_004 | 2O3X | 0.1959 | 0 | Isolated non-canonical cWW pair | B+A | RNA (23-mer) | G | 28 | U | 29 | C | 30 | * | G | 19 | U | 20 | C | 21 | cWW | cwW | cWW |
63 | IL_4KNQ_001 | 4KNQ | 0.1761 | 0 | Isolated non-canonical cWW pair | B | RNA (20-mer) | C | 216||||4_555 | C | 217||||4_555 | G | 218||||4_555 | * | C | 204 | C | 205 | G | 206 | cWW | cWw | cWW |
64 | IL_4V9F_047 | 4V9F | 0.1459 | 0 | Isolated non-canonical cWW pair | 0 | LSU rRNA | G | 1349 | U | 1350 | G | 1351 | * | C | 1303 | U | 1304 | C | 1305 | cWW | cwW | cWW |
65 | IL_5T3K_002 | 5T3K | 0.1694 | 0 | Isolated non-canonical cWW pair | A+B | RNA (17-mer) + RNA (16-mer) | G | 10 | U | 11 | C | 12 | * | G | 24 | 75B | 25 | C | 26 | cWW | cwW | cWW |
66 | IL_1T0E_002 | 1T0E | 0.2170 | 0 | Isolated non-canonical cWW pair | A+C | RNA (18-mer) + RNA (17-mer) | G | 10||A | U | 11 | C | 12 | * | G | 14 | U | 15 | C | 16 | cWW | cwW | cWW |
67 | IL_1ZX7_006 | 1ZX7 | 0.1655 | 0 | Isolated non-canonical cWW pair | E+F | RNA (15-mer) + RNA (14-mer) | G | 10 | U | 11 | C | 12 | * | G | 24 | U | 25 | C | 26 | cWW | cwW | cWW |
68 | IL_8FEQ_001 | 8FEQ | 0.1763 | 0 | Isolated non-canonical cWW pair | AAA | RNA 16mer with two separated s(2)U | G | 4 | SUR | 5 | A | 6 | * | U | 11||||4_555 | SUR | 12||||4_555 | C | 13||||4_555 | cWW | cwW | cWW |
69 | IL_1L9A_009 | 1L9A | 0.2710 | 0 | Isolated non-canonical cWW pair | B | signal recognition particle RNA S domain | A | 228 | U | 229 | C | 230 | * | G | 120 | U | 121 | U | 122 | ncWW | ncwW | cWW |
70 | IL_5J7L_273 | 5J7L | 0.3461 | 0 | Isolated non-canonical cWW pair | DA | LSU rRNA | U | 870 | U | 871 | U | 872 | * | A | 905 | U | 906 | G | 907 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUC*GUC | 23 |
AUC*GUU | 5 |
CUG*UUG | 4 |
AUA*UUU | 4 |
CCU*AUG | 4 |
AUG*CUU | 3 |
UUG*UUG | 2 |
UUG*UUA | 2 |
AUG*UUU | 2 |
AUU*AUU | 2 |
GUG*CUC | 2 |
CUG*UUUG | 1 |
GUG*UUAUC | 1 |
CUC*GUUG | 1 |
AUC*GUUU | 1 |
CCG*UCG | 1 |
UUU*AUA | 1 |
ACU*ACT | 1 |
UUC*GUA | 1 |
CUG*CUG | 1 |
CUC*GUG | 1 |
ACU*AUU | 1 |
AUU*ACU | 1 |
UUA*UUA | 1 |
CCG*CCG | 1 |
GUC*GC | 1 |
G(SUR)A*U(SUR)C | 1 |
UUU*AUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
U*U | 55 |
C*U | 5 |
U*UU | 3 |
C*C | 3 |
U*UAU | 1 |
U*C | 1 |
U*(75B) | 1 |
(SUR)*(SUR) | 1 |
Release history
Release | 3.95 |
---|---|
Date | 2025-03-26 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (62)
- Isolated non-canonical cWW pair (H) (7)
- (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.01 | Avg 0.25 | Max 0.62
Coloring options: