#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_4FAW_0144FAW0.79552AGroup II catalytic intron D1-D4-1U375G378*U365A366cWWcWW
2 IL_4C7O_0034C7O0.85951Single bulged CESRP RNAC31G33*C12G13cWWcWW
3 IL_3U5H_0633U5H0.81871525S rRNAC1385G1387*C1420G1421cWWcWW
4 IL_1KXK_0031KXK0.84722Multiple bulged basesAai5g group II Self-splicing intronC42G45*U28G29cWWcWW
5 IL_3U5H_0193U5H0.54761525S rRNAC577G579*U512G513cWWcWW
6 IL_1S72_0991S720.17341Major groove intercalation (H)9 5S rRNAC64G66*C15G16cWWcWW
7 IL_1S72_0221S720.09822Multiple bulged bases (H)0 LSU rRNAC699G702*C726G727cWWcWW
8 IL_2QBG_0602QBG0.00001B23S rRNAC1489G1491*C1499G1500cWWcWW
9 IL_2AW7_0052AW70.09132A16S ribosomal RNAC63A66*U103G104cWWcWW
10 IL_1FJG_0051FJG0.11202Multiple bulged bases (H)A SSU rRNAC63G66*C103G104cWWcWW
11 IL_2NZ4_0072NZ40.15311G+Rsubstrate strand RNA 13-mer + GlmS ribozymeC5G7*C52G53cWWcWW
12 IL_3U5H_1373U5H0.23931525S rRNAU3381G3383*C3324G3325cWWcWW
13 IL_3V2F_0593V2F0.25681A23S Ribosomal RNAU1489G1491*C1499G1500cWWcWW
14 IL_2QBG_0862QBG0.30051B23S rRNAU2202G2204*U2220G2221cWWcWW
15 IL_4A1B_0634A1B0.27611126S RRNAU1424G1426*U1437A1438cWWcWW
16 IL_1S72_0421S720.23131Single bulged G (H)0 LSU rRNAU1136G1138*C1225G1226cWWcWW
17 IL_3V2F_0693V2F0.33322A23S Ribosomal RNAU1898A1901*U1841G1842cWWcWW
18 IL_4IOA_0674IOA0.39552Multiple bulged basesX LSU rRNAU1881A1884*U1833G1834cWWcWW
19 IL_1XOK_0011XOK0.42392Basepair outside cWWAalfalfa mosaic virus RNA 3' UTRA864G867*C846U847cWWcWW
20 IL_1XOK_0021XOK0.51222Basepair outside cWWB+Aalfalfa mosaic virus RNA 3' UTRG877G880*C868C869cWWcWW
21 IL_387D_001387D0.59052Multiple bulged basesARNA PseudoknotG15A18*U1C2cWWcWW
22 IL_1U9S_0081U9S0.75931Stack outside cWWARIBONUCLEASE PG217C219*G195C196cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAG*CG4
UACG*UA1
CCG*CG1
CACG*UG1
CAG*UG1
CAUG*CG1
CGAA*UG1
CGUG*CG1
UUG*CG1
UAG*CG1
UUG*UG1
UUG*UA1
UGG*CG1
UG*UGAA1
UGAA*UG1
AAUG*CU1
GAUG*CC1
GGAA*UC1
GGC*GC1
Non-Watson-Crick part of the motif
SequenceCounts
A*6
AU*3
GA*3
U*3
AC*2
G*2
C*1
GU*1
*GA1
Annotations
  • (11)
  • Multiple bulged bases (3)
  • Multiple bulged bases (H) (2)
  • Basepair outside cWW (2)
  • Single bulged G (H) (1)
  • Major groove intercalation (H) (1)
  • Stack outside cWW (1)
  • Single bulged C (1)
  • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.09 | Avg 0.51 | Max 0.97
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