#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_4NVV_1074NVV0.19861B5S Ribosomal RNAC17G18*C65G67cWWcWW
2 IL_1S72_0991S720.17341Major groove intercalation (H)9 5S rRNAC15G16*C64G66cWWcWW
3 IL_1S72_0221S720.09822Multiple bulged bases (H)0 LSU rRNAC726G727*C699G702cWWcWW
4 IL_2QBG_0602QBG0.00001B23S rRNAC1499G1500*C1489G1491cWWcWW
5 IL_2AW7_0052AW70.09132A16S ribosomal RNAU103G104*C63A66cWWcWW
6 IL_1FJG_0051FJG0.11202Multiple bulged bases (H)A SSU rRNAC103G104*C63G66cWWcWW
7 IL_2NZ4_0072NZ40.15311R+GGlmS ribozymeC52G53*C5G7cWWcWW
8 IL_3U5H_1373U5H0.23931525S rRNAC3324G3325*U3381G3383cWWcWW
9 IL_4NVV_0614NVV0.23241A23S Ribosomal RNAC1545G1546*U1535G1537cWWcWW
10 IL_2QBG_0862QBG0.30051B23S rRNAU2220G2221*U2202G2204cWWcWW
11 IL_4A1B_0634A1B0.27611126S RRNAU1437A1438*U1424G1426cWWcWW
12 IL_1S72_0421S720.23131Single bulged G (H)0 LSU rRNAC1225G1226*U1136G1138cWWcWW
13 IL_4NVV_0724NVV0.33242A23S Ribosomal RNAU1872G1873*U1920A1923cWWcWW
14 IL_4IOA_0674IOA0.39552Multiple bulged basesX LSU rRNAU1833G1834*U1881A1884cWWcWW
15 IL_4NVV_0344NVV0.46851A23S Ribosomal RNAG927G928*U941C943cWW
16 IL_1XOK_0011XOK0.42392Basepair outside cWWAalfalfa mosaic virus RNA 3' UTRC846U847*A864G867cWWcWW
17 IL_1XOK_0021XOK0.51222Basepair outside cWWA+Balfalfa mosaic virus RNA 3' UTRC868C869*G877G880cWWcWW
18 IL_387D_001387D0.59052Multiple bulged basesARNA PseudoknotU1C2*G15A18cWWcWW
19 IL_1U9S_0081U9S0.75931Stack outside cWWARIBONUCLEASE PG195C196*G217C219cWWcWW
20 IL_4FAW_0144FAW0.79552AGroup II catalytic intron D1-D4-1U365A366*U375G378cWWcWW
21 IL_4C7O_0034C7O0.85951Single bulged CESRP RNAC12G13*C31G33cWWcWW
22 IL_3U5H_0633U5H0.81871525S rRNAC1420G1421*C1385G1387cWWcWW
23 IL_1KXK_0031KXK0.84722Multiple bulged basesAai5g group II Self-splicing intronU28G29*C42G45cWWcWW
24 IL_3U5H_0193U5H0.54761525S rRNAU512G513*C577G579cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CG*CAG5
UG*UGAA2
CG*CAUG1
UG*CGAA1
CG*CGUG1
CG*UUG1
UAG*CG1
UG*UUG1
UA*UUG1
CG*UGG1
GG*UAC1
CU*AAUG1
CC*GAUG1
UC*GGAA1
GC*GGC1
UA*UACG1
CG*CCG1
UG*CACG1
UG*CAG1
Non-Watson-Crick part of the motif
SequenceCounts
*A7
*GA4
*AU3
*U3
*G2
*AC2
*GU1
A*1
*C1
Annotations
  • (13)
  • Multiple bulged bases (3)
  • Multiple bulged bases (H) (2)
  • Basepair outside cWW (2)
  • Single bulged G (H) (1)
  • Major groove intercalation (H) (1)
  • Stack outside cWW (1)
  • Single bulged C (1)
  • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.09 | Avg 0.51 | Max 0.97
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 1.1059 s