Motif IL_29007.1 Version IL_29007.1 of this group appears in releases 3.77 to 3.79

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-2	1-5	2-5	3-4
1	IL_7A0S_066	7A0S	0.6276	1	Minor groove platform, major groove intercalation	X	LSU rRNA	C	1829	G	1831	G	1832	*	C	1885	G	1886		cWW		cWW
2	IL_5TBW_084	5TBW	0.6514	1	Major groove intercalation	1	LSU rRNA	C	2196	A	2198	G	2199	*	C	2245	G	2246		cWW		cWW
3	IL_7RQB_071	7RQB	0.7060	1	Minor groove platform, major groove intercalation	1A	LSU rRNA	C	1837	G	1839	G	1840	*	C	1902	G	1903		cWW		cWW
4	IL_4V9F_066	4V9F	0.6255	1	Minor groove platform, major groove intercalation	0	LSU rRNA	C	1893	A	1895	G	1896	*	C	1943	G	1944		cWW		cWW
5	IL_5J7L_314	5J7L	0.5950	1	Minor groove platform, major groove intercalation	DA	LSU rRNA	C	1837	G	1839	G	1840	*	C	1902	G	1903		cWW	ntHS	cWW
6	IL_1U9S_005	1U9S	0.5662	1	Minor groove platform, major groove intercalation	A	RIBONUCLEASE P	C	136	G	138	C	139	*	G	161	G	162		cWW	ntHS	cWW
7	IL_1U9S_002	1U9S	0.7722	2	Major groove intercalation	A	RIBONUCLEASE P	G	111	A	114	G	115	*	C	228	C	229		cWW		cWW
8	IL_7A0S_068	7A0S	0.5441	1	Major groove minor groove platform; mini C-loop	X	LSU rRNA	G	1838	A	1840	G	1841	*	C	1876	C	1877		cWW	ncWS	cWW
9	IL_7RQB_073	7RQB	0.4352	1	Minor groove platform	1A	LSU rRNA	G	1846	A	1848	G	1849	*	C	1893	C	1894		cWW	ncWS	cWW
10	IL_4LFB_045	4LFB	0.5257	2	Minor groove platform	A	SSU rRNA	U	1199	G	1202	C	1203	*	G	1057	G	1058		cWW	tHS	cWW
11	IL_5J7L_048	5J7L	0.5046	2	Minor groove platform	AA	SSU rRNA	U	1199	U	1202	C	1203	*	G	1057	G	1058		cWW	tHS	cWW
12	IL_6CZR_155	6CZR	0.5224	2	Minor groove platform	1a	SSU rRNA	U	1181	G	1184	C	1185	*	G	1040	G	1041		cWW	ntHS	cWW
13	IL_3RW6_003	3RW6	0.5408	1	Minor groove platform	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	U	38	A	40	U	41	*	A	20	G	21		cWW	tHS	cWW
14	IL_6CZR_116	6CZR	0.0000	0	Minor groove platform	1a	SSU rRNA	C	55	A	56	U	57	*	A	352	G	353		cWW	ntHS	cWW
15	IL_5J7L_004	5J7L	0.1678	0	Minor groove platform	AA	SSU rRNA	C	54	A	55	U	56	*	A	356	G	357		cWW	tHS	cWW
16	IL_4LFB_004	4LFB	0.1524	0	Minor groove platform	A	SSU rRNA	C	54	A	55	U	56	*	A	356	G	357		cWW	tHS	cWW
17	IL_4V88_388	4V88	0.2009	0	Minor groove platform	A6	SSU rRNA	C	50	A	51	U	52	*	A	428	G	429		cWW	tHS	cWW
18	IL_4LFB_054	4LFB	0.2799	0	Minor groove platform	A	SSU rRNA	C	1260	A	1261	C	1262	*	G	1273	G	1274		ncWW	tHS	cWW
19	IL_4UYK_001	4UYK	0.3163	0	Minor groove platform	R	SRP RNA	C	122	A	123	C	124	*	G	77	G	78			tHS	cWW
20	IL_4V88_454	4V88	0.3234	0	Minor groove platform	A6	SSU rRNA	C	1306	U	1307	G	1308	*	C	1317	G	1318	cSH	cWW	tHS	cWW
21	IL_7RQB_032	7RQB	0.5901	0	Minor groove platform	1A	LSU rRNA	U	877	A	878	G	879	*	C	898	A	899		cWW		cWW
22	IL_4LFB_053	4LFB	0.4510	0	Not an internal loop	A	SSU rRNA	G	1274	A	1275	G	1276	*	C	1259	C	1260		ncWW	ntHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAU*AG	4
CCGG*CG	3
CCAG*CG	2
GAAG*CC	2
UCAGC*GG	2
CAC*GG	2
CAGC*GG	1
GAAAG*CC	1
UCAUC*GG	1
UAAU*AG	1
CUG*CG	1
UAG*CA	1
GAG*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	8
CG*	3
AA*	3
CA*	2
CAG*	2
AG*	1
AAA*	1
CAU*	1
U*	1

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	New id, > 2 parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Minor groove platform (13)
Minor groove platform, major groove intercalation (5)
Major groove intercalation (2)
Not an internal loop (1)
Major groove minor groove platform; mini C-loop (1)
Basepair signature: cWW-tHS-cWW
Heat map statistics: Min 0.07 | Avg 0.49 | Max 0.92

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Coloring options: Nucleotide numbers

Motif IL_29007.1 Version IL_29007.1 of this group appears in releases 3.77 to 3.79 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_29007.1 Version IL_29007.1 of this group appears in releases 3.77 to 3.79

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