Motif IL_32449.1 Version IL_32449.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_421 | 4V88 | 0.6595 | 0 | Triple sheared related | A6 | SSU rRNA | G | 730 | C | 731 | G | 732 | A | 733 | A | 734 | C | 735 | * | G | 703 | C | 704 | U | 705 | A | 706 | A | 707 | C | 708 | cWW | cWW | ntSH | ncWW | cWW | |
| 2 | IL_5TBW_476 | 5TBW | 0.0000 | 2 | 1 | LSU rRNA | G | 3345 | U | 3346 | A | 3347 | G | 3348 | C | 3349 | C | 3350 | * | G | 3353 | G | 3356 | U | 3357 | U | 3358 | A | 3359 | C | 3360 | cWW | ncWW | ncWW | ncWW | cWW | ||
| 3 | IL_6CZR_369 | 6CZR | 0.3836 | 1 | 1a | SSU rRNA | G | 1469 | A | 1470 | G | 1472 | U | 1473 | C | 1474 | G | 1475 | * | 5MC | 1387 | G | 1388 | U | 1389 | 5MC | 1390 | A | 1391 | C | 1392 | cWW | cwW | ncWW | ncWW | cWW | ||
| 4 | IL_1L9A_008 | 1L9A | 0.4137 | 0 | tSH-tHW-tHS-cWW | B | signal recognition particle RNA S domain | G | 204 | A | 205 | G | 206 | C | 207 | A | 208 | G | 209 | * | C | 190 | C | 191 | A | 192 | G | 193 | G | 194 | U | 195 | cWW | cWW | cWB | tWH | ncWW | cWW |
| 5 | IL_4N0T_001 | 4N0T | 0.6052 | 0 | Double sheared; A in syn; two near cWW pairs | B | U6 snRNA | G | 31 | U | 32 | C | 33 | A | 34 | A | 35 | U | 36 | * | A | 95 | G | 96 | A | 97 | G | 98 | A | 99 | C | 100 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGAAC*GCUAAC | 1 |
| GUAGCC*GUUGUUAC | 1 |
| GAAGUCG*(5MC)GU(5MC)AC | 1 |
| GAGCAG*CCAGGU | 1 |
| GUCAAU*AGAGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAA*CUAA | 1 |
| UAGC*UUGUUA | 1 |
| AAGUC*GU(5MC)A | 1 |
| AGCA*CAGG | 1 |
| UCAA*GAGA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- tSH-tHW-tHS-cWW (1)
- Double sheared; A in syn; two near cWW pairs (1)
- Triple sheared related (1)
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-cWW
- Heat map statistics
- Min 0.38 | Avg 0.48 | Max 0.91
Coloring options: