Motif IL_33484.1 Version IL_33484.1 of this group appears in releases 1.6 to 1.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_022 | 1FJG | 0.5659 | 5 | A | SSU rRNA | C | 880 | G | 881 | * | C | 569 | G | 575 | cWW | cWW | |
| 2 | IL_1KXK_003 | 1KXK | 0.0000 | 2 | Multiple bulged bases | A | ai5g group II Self-splicing intron | U | 28 | G | 29 | * | C | 42 | G | 45 | cWW | cWW |
| 3 | IL_3U5F_086 | 3U5F | 0.1697 | 1 | 6 | 18S rRNA | U | 1743 | A | 1744 | * | U | 1656 | G | 1658 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*CGUAAAG | 1 |
| UG*CACG | 1 |
| UA*UUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GUAAA | 1 |
| *AC | 1 |
| *U | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_33484.1 | Only in the parent motif |
|---|---|---|---|
| IL_71565.4 Compare | IL_1KXK_003, IL_3U5F_086 | IL_1FJG_022 | IL_3V2F_082, IL_1S72_093 |
| IL_35994.1 Compare | IL_1FJG_022 | IL_1KXK_003, IL_3U5F_086 | IL_4IOA_094 |
Children motifs
| Child motif | Common motif instances | Only in IL_33484.1 | Only in the child motif |
|---|---|---|---|
| IL_39674.1 Compare | IL_1KXK_003, IL_3U5F_086 | IL_1FJG_022 | IL_3V2F_082, IL_1S72_093 |
| IL_74214.1 Compare | IL_1FJG_022 | IL_1KXK_003, IL_3U5F_086 | IL_4IOA_094 |
- Annotations
-
- (2)
- Multiple bulged bases (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.17 | Avg 0.30 | Max 0.62
Coloring options: