#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-51-62-53-44-5
1 IL_3O30_0363O300.75680118S ribosomal RNAC686G687G688*C646G647G648ncWWcWWcWW
2 IL_3O58_0193O580.79640125S ribosomal RNAA387G388A389*U380U381U382cWWcWW
3 IL_3O30_0303O300.81071118S ribosomal RNAC530C531U532*A520A521G523cWWncBWcWW
4 IL_3PYO_0523PYO0.70861A23S ribosomal RNAC1557A1558G1560*U1433A1434G1435cWWcWW
5 IL_3O58_0373O580.49000125S ribosomal RNAC753G754A755*U777U778G779cWWncWWacWW
6 IL_1M5O_0031M5O0.35240BRNA HAIRPIN RIBOZYMEC79U80U81*G72G73G74cWWcWW
7 IL_3O58_1463O580.00000125S ribosomal RNAA3168U3169A3170*U3280U3281U3282cWWcWWncSH
8 IL_3O30_0603O300.52000118S ribosomal RNAG1464C1465G1466*C1173C1174U1175cWWncBWcWW
9 IL_1YZ9_0011YZ90.61530Isolated non-canonical cWW pairC+DRNA (11-mer)A4C5U6*A15C16U17cWWncWBcWW
10 IL_1O9M_0031O9M0.53081A+BEUBACTERIAL A-SITEG1491A1493G1494*C1407A1408C1409cWWcWW
11 IL_1YZ9_0021YZ90.62640Isolated non-canonical cWW pairF+ERNA (11-mer)A15C16U17*A4C5U6cWWncWBcWW
12 IL_1RPU_0011RPU0.58610Isolated non-canonical cWW pairC+DRNA (21-mer)U9||AC10||AA11||A*U9||AC10||AA11||AcWWncWBcWW
13 IL_3O30_0753O300.42570118S ribosomal RNAC1355U1356A1357*U1366G1367G1368cWWcWW
14 IL_2XZM_0692XZM0.56500A18S RRNAC1295G1296A1297*U1262G1263G1264cWWcWW
15 IL_2XZM_0602XZM0.57490A18S RRNAG1435C1436G1437*C1145C1146U1147ncWWncBWcWW
16 IL_3O30_0693O300.67930118S ribosomal RNAC1323G1324A1325*U1290G1291G1292cWWcWW
17 IL_2XZM_0812XZM0.66390A18S RRNAG1518U1519U1520*A1535U1536C1537cWWcWW
18 IL_3MEI_0023MEI0.67240Isolated non-canonical cWW pairB+ARNA (23-mer)G13C14C15*G8C9C10cWWncWBcWW
19 IL_1SI3_0011SI30.56820Isolated non-canonical cWW contactBRNA (9-mer)U403G404A405*U403||||4_675G404||||4_675A405||||4_675cWWcWW
20 IL_3O30_0253O300.51800118S ribosomal RNAC479G480A481*U507U508G509cWWncWWacWW
21 IL_353D_001353D0.41870A+BRNA (12-mer)G8U9G10*U15G16C17cWWncWWacWW
22 IL_1NBS_0061NBS0.46190B RNase P class BG116U117C118*G125G126C127cWWncWWcWW
23 IL_3O58_1443O580.44950125S ribosomal RNAG3289G3290G3291*C3159U3160C3161cWWncWWcWW
24 IL_2XZM_0122XZM0.49270A18S RRNAU156G157G158*C144G145A146cWWcWW
25 IL_3O58_0593O580.61120125S ribosomal RNAC1017G1018G1019*U1033U1034G1035cWWncWW
26 IL_1S72_0951S720.65321Isolated non-canonical cWW with bulges (H)0 LSU rRNAG2900C2901C2903*G2855A2856C2857cWWncWWcWW
27 IL_2AW7_0632AW70.64841A16S ribosomal RNAG1491A1492G1494*C1407A1408C1409ncWWcWW
28 IL_3PYO_1033PYO0.67310B5S ribosomal RNAC94U95G96*U80G81G82cWWcWW
29 IL_2ZJR_1072ZJR0.55600Isolated non-canonical cWW pair (H)Y 5S rRNAC97C98G99*U82C83G84cWWcWBcWW
30 IL_3O30_0133O300.65200118S ribosomal RNAA162G163A164*U150G151U152cWWncwWcWW
31 IL_2QBG_0852QBG0.79220B23S rRNAC2179U2180U2181*A2108U2109G2110cWWcWW
32 IL_3O58_0293O580.73850125S ribosomal RNAA527U528A529*U563G564U565cWWncWWcWW
33 IL_3MOJ_0023MOJ0.69040A LSU rRNAA2513U2514C2515*G2569G2570U2571ncWWncWWacWW
34 IL_2ZJR_0422ZJR0.75670Isolated non-canonical cWW pair (H)X LSU rRNAC1218C1219G1220*C1252C1253G1254cWWncWBcWW
35 IL_3PYO_0413PYO0.89431A23S ribosomal RNAA1247U1249G1250*C1196G1197U1198cWWcSWcWW
36 IL_3O58_0733O580.97231125S ribosomal RNAA1428U1430G1431*C1376G1377U1378cWWncSWcWW
37 IL_2ZJR_0532ZJR0.73561X LSU rRNAG1573A1574G1576*U1447A1448C1449cWWncWwcWW
38 IL_3O58_1053O580.84612125S ribosomal RNAC2235G2236C2237*G2206A2207G2210cWWcWW
39 IL_3O58_0263O580.81410125S ribosomal RNAC580U581G582*U508U509G510ncWWcWW
40 IL_3O30_0213O300.99890118S ribosomal RNAC411A412U413*A420A421G422cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGA*UUG2
GCG*CCU2
ACU*ACU2
GAAG*CAC2
CGA*UGG2
AGUG*CGU2
CGG*CGG1
UUU*AGA1
CCU*AAUG1
CAGG*UAG1
CUU*GGG1
AUA*UUU1
UCA*UCA1
CUA*UGG1
GUU*AUC1
GCC*GCC1
UGA*UGA1
GUG*UGC1
GUC*GGC1
CUC*GGG1
UGG*CGA1
CGG*UUG1
GCAC*GAC1
UGG*CUG1
CCG*UCG1
AGA*UGU1
CUU*AUG1
AUA*UGU1
AUC*GGU1
CCG*CCG1
GACG*UAC1
CGC*GAAUG1
UUG*CUG1
CAU*AAG1
Non-Watson-Crick part of the motif
SequenceCounts
U*G8
C*C8
G*G6
G*U4
U*U4
AA*A2
GU*G2
C*AU1
AG*A1
CA*A1
AC*A1
G*AAU1
A*A1

Release history

Release0.5
Date2011-12-08
StatusNew id, 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_42829.1Only in the parent motif
IL_90629.2
Compare
IL_1YZ9_001, IL_1YZ9_002, IL_3MEI_002, IL_2ZJR_042, IL_1S72_095, IL_2ZJR_107, IL_1RPU_001, IL_2ZJR_053, IL_1O9M_003IL_353D_001, IL_3O30_021, IL_2QBG_085, IL_3O30_025, IL_3O58_105, IL_3O58_029, IL_3O30_060, IL_2XZM_012, IL_3PYO_041, IL_3O30_069, IL_3O58_026, IL_3O58_146, IL_3O58_144, IL_3PYO_052, IL_2XZM_060, IL_1M5O_003, IL_3O30_036, IL_3O30_030, IL_3O58_059, IL_3PYO_103, IL_3O30_013, IL_2AW7_063, IL_3MOJ_002, IL_2XZM_069, IL_3O58_073, IL_3O58_019, IL_3O58_037, IL_1SI3_001, IL_3O30_075, IL_2XZM_081, IL_1NBS_006IL_2ZJR_019, IL_2ZJR_013, IL_2ZJR_010, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_1O9M_004, IL_1S72_047, IL_157D_002, IL_405D_001, IL_1ZH5_001, IL_2FQN_001, IL_3F1H_094, IL_2FQN_004, IL_2O3Y_004, IL_2O3Y_001, IL_1FJG_058, IL_3GLP_003, IL_1T0E_002, IL_1Z7F_002, IL_1FJG_056, IL_1Z7F_001, IL_3BNL_004, IL_3BNL_001, IL_3BNL_002, IL_2ZJR_090, IL_3CUN_002, IL_3F1H_085, IL_3F1H_080, IL_3F1H_081, IL_2ZJR_036, IL_2ZJR_030, IL_2QEK_001, IL_1FJG_044, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_3F1H_016, IL_2O3V_004, IL_3F1H_014, IL_2O3V_001, IL_2ZJR_029, IL_2ZJR_025, IL_3NJ7_002, IL_3NJ7_003, IL_3NJ7_001, IL_3NJ7_006, IL_3NJ7_004, IL_3NJ7_005, IL_3BNQ_012, IL_1KFO_003, IL_1KFO_002, IL_3BNP_001, IL_5MSF_001, IL_5MSF_002, IL_1U9S_007, IL_1FJG_062, IL_1S72_085, IL_3BNQ_001, IL_3BNQ_006, IL_3BNQ_007, IL_3F1H_033, IL_2ZI0_001, IL_3F1H_039, IL_3D0U_006, IL_3BNP_004, IL_3BNT_006, IL_3BNT_001, IL_405D_002, IL_1MWL_004, IL_157D_001, IL_1MWL_001, IL_1T0D_002, IL_1MZP_001, IL_1T0D_004, IL_1FJG_010, IL_3DIR_006, IL_3F1H_024, IL_2ZKO_001, IL_2ZJR_100, IL_1FJG_006, IL_2OE5_001, IL_3E5C_001, IL_2Q1R_002, IL_2Q1R_001, IL_3F1H_113, IL_1L9A_007, IL_3F1H_054, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1ZX7_008, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_3HL2_002, IL_2ZJR_079, IL_3F1H_043, IL_1S72_024, IL_3HHN_004, IL_3HHN_002
IL_69192.1
Compare
IL_1SI3_001IL_353D_001, IL_1YZ9_001, IL_2QBG_085, IL_3O30_025, IL_3O58_105, IL_3O58_029, IL_3O30_060, IL_2XZM_012, IL_2ZJR_053, IL_3O30_069, IL_3O58_026, IL_3O58_146, IL_3MEI_002, IL_3O30_030, IL_3O58_144, IL_1O9M_003, IL_3PYO_052, IL_2XZM_060, IL_1M5O_003, IL_3O30_036, IL_1YZ9_002, IL_2ZJR_042, IL_3O58_059, IL_3PYO_041, IL_3PYO_103, IL_3O30_013, IL_2AW7_063, IL_1S72_095, IL_2XZM_069, IL_3O58_073, IL_3O58_019, IL_3O58_037, IL_3O30_021, IL_2ZJR_107, IL_1RPU_001, IL_3O30_075, IL_2XZM_081, IL_1NBS_006, IL_3MOJ_002

Children motifs

Child motifCommon motif instancesOnly in IL_42829.1Only in the child motif
IL_47174.1
Compare
IL_1YZ9_001, IL_2QBG_085, IL_3MEI_002, IL_2ZJR_107, IL_2ZJR_042, IL_1YZ9_002, IL_2AW7_063, IL_1S72_095, IL_2XZM_069, IL_1RPU_001, IL_2XZM_012, IL_2ZJR_053, IL_2XZM_081, IL_2XZM_060IL_353D_001, IL_3O30_021, IL_3O30_025, IL_3O58_105, IL_3O58_029, IL_3O30_060, IL_3PYO_041, IL_3O30_069, IL_3O58_026, IL_3O58_146, IL_3O58_144, IL_1O9M_003, IL_3PYO_052, IL_1M5O_003, IL_3O30_036, IL_3O30_030, IL_3O58_059, IL_3PYO_103, IL_3O30_013, IL_3MOJ_002, IL_3O58_073, IL_3O58_019, IL_3O58_037, IL_1SI3_001, IL_3O30_075, IL_1NBS_006IL_2ZJR_019, IL_3KTW_002, IL_2ZJR_013, IL_2ZJR_010, IL_2AW7_052, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_3UXR_080, IL_3U5H_109, IL_1S72_047, IL_2QBG_020, IL_2XZM_036, IL_2XZM_037, IL_1Z7F_002, IL_405D_002, IL_405D_001, IL_1ZH5_001, IL_2ZJR_063, IL_2FQN_001, IL_2FQN_004, IL_2QBG_096, IL_1ZX7_008, IL_4A1B_048, IL_2QBG_018, IL_1FJG_058, IL_3GLP_003, IL_1T0E_002, IL_4A1B_041, IL_3U5H_076, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_2XZM_001, IL_4A1B_083, IL_3BNL_004, IL_3BNL_001, IL_3U5F_087, IL_2ZJR_090, IL_2XZM_085, IL_3CUN_002, IL_2XZM_086, IL_1XJR_003, IL_2QBG_083, IL_2ZJR_036, IL_2ZJR_030, IL_3TD0_006, IL_3UXR_064, IL_3U5H_028, IL_2QEK_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_2XZM_015, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_3UXR_017, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_3TD0_002, IL_2O3V_001, IL_3U5H_087, IL_2XZM_090, IL_3BNQ_006, IL_3UXR_081, IL_1ZX7_004, IL_2ZJR_025, IL_3NJ7_002, IL_1ZX7_002, IL_2Q1R_002, IL_3NJ7_005, IL_4A1B_061, IL_3UXR_053, IL_3BNQ_012, IL_1MFQ_003, IL_3U5H_017, IL_3UXR_059, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_5MSF_001, IL_5MSF_002, IL_4A1C_009, IL_2XZM_034, IL_1FJG_062, IL_3U5F_084, IL_3TD1_006, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_3U5F_082, IL_3U5H_022, IL_2XZM_075, IL_3U5F_089, IL_2XZM_072, IL_3BNQ_007, IL_1MFQ_002, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_3IVK_004, IL_157D_002, IL_1MWL_004, IL_157D_001, IL_1MWL_001, IL_1T0D_002, IL_3UXR_034, IL_1MZP_001, IL_1T0D_004, IL_3U5H_036, IL_2XZM_043, IL_2AW7_064, IL_3RW6_008, IL_2AW7_062, IL_1FJG_010, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_2XZM_020, IL_3LOA_003, IL_2ZKO_001, IL_3U5F_015, IL_3RG5_001, IL_2ZJR_100, IL_4A1B_015, IL_3IVK_002, IL_3U5H_008, IL_4A1B_034, IL_3RG5_002, IL_1FJG_006, IL_3U5H_128, IL_2OE5_001, IL_3U5H_121, IL_2XZM_058, IL_3U5F_065, IL_3U5F_063, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_3U5H_049, IL_3TD0_001, IL_2QBG_065, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_3TD0_005, IL_1U6B_005, IL_3UXR_015, IL_4A1B_028, IL_1U6B_001, IL_1ZX7_006, IL_4A1B_027, IL_4A1B_024, IL_3BNQ_001, IL_3U5H_114, IL_3U5H_116, IL_3U5H_118, IL_4A1B_107, IL_1UN6_005, IL_3UXR_095, IL_1ZEV_001, IL_3U5H_051, IL_2QBG_034, IL_3U5F_072, IL_2QBG_030, IL_3U5H_044, IL_2ZJR_079, IL_4A1B_104, IL_1S72_024
IL_34156.1
Compare
IL_1SI3_001IL_353D_001, IL_3O30_021, IL_2QBG_085, IL_2ZJR_053, IL_3O58_105, IL_3O58_029, IL_3O30_060, IL_2XZM_012, IL_3O30_025, IL_3O30_069, IL_3O58_026, IL_3O58_146, IL_3MEI_002, IL_2ZJR_042, IL_3O58_144, IL_1O9M_003, IL_3O30_036, IL_3PYO_052, IL_2XZM_060, IL_1M5O_003, IL_1YZ9_001, IL_1YZ9_002, IL_3O30_030, IL_3O58_059, IL_3PYO_041, IL_3PYO_103, IL_3O30_013, IL_2AW7_063, IL_3MOJ_002, IL_2XZM_069, IL_3O58_073, IL_3O58_019, IL_3O58_037, IL_2ZJR_107, IL_1RPU_001, IL_3O30_075, IL_2XZM_081, IL_1NBS_006, IL_1S72_095IL_3U5F_012, IL_3UXR_025
IL_40090.1
Compare
IL_1O9M_003IL_353D_001, IL_3O30_021, IL_2QBG_085, IL_2ZJR_053, IL_3O58_105, IL_3O58_029, IL_3O30_060, IL_2XZM_012, IL_3O30_025, IL_3O30_069, IL_3O58_026, IL_3O58_146, IL_3MEI_002, IL_2ZJR_042, IL_3O58_144, IL_3O30_036, IL_3PYO_052, IL_2XZM_060, IL_1M5O_003, IL_1YZ9_001, IL_1YZ9_002, IL_3O30_030, IL_3O58_059, IL_3PYO_041, IL_3PYO_103, IL_3O30_013, IL_2AW7_063, IL_3MOJ_002, IL_2XZM_069, IL_3O58_073, IL_3O58_019, IL_3O58_037, IL_1SI3_001, IL_2ZJR_107, IL_1RPU_001, IL_3O30_075, IL_2XZM_081, IL_1NBS_006, IL_1S72_095IL_2AW7_049, IL_3U5F_067, IL_3U5H_052, IL_2ZJR_041, IL_1S72_046, IL_3UXR_042, IL_3U5F_093, IL_3U5H_062, IL_2QBG_045, IL_3UXR_030, IL_1FJG_041
Annotations
  • (32)
  • Isolated non-canonical cWW pair (4)
  • Isolated non-canonical cWW pair (H) (2)
  • Isolated non-canonical cWW with bulges (H) (1)
  • Isolated non-canonical cWW contact (1)
  • Basepair signature
    Heat map statistics
    Min 0.05 | Avg 0.60 | Max 1.16
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