Motif IL_34363.3 Version IL_34363.3 of this group appears in releases 1.15 to 1.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8	break		9		10		11		12		13	1-5	1-13	2-12	4-12	5-13	7-10	8-9
1	IL_4IOA_039	4IOA	0.3068	1	Kink-turn (H)	X	LSU rRNA	C	1054	A	1055	U	1056	G	1058	A	1059	C	1060	A	1061	G	1062	*	U	1119	C	1120	G	1121	A	1122	G	1123		cWW		ntSH			ncWW
2	IL_4CUV_060	4CUV	0.2145	1		1	25S RRNA	U	1218	C	1219	U	1220	G	1222	A	1223	C	1224	A	1225	G	1226	*	C	1283	C	1284	G	1285	A	1286	A	1287		cWW	ntsS	ntSH		ntHS	cWW
3	IL_1S72_043	1S72	0.0000	1	Kink-turn (H)	0	LSU rRNA	C	1147	C	1148	U	1149	G	1151	A	1152	C	1153	A	1154	G	1155	*	C	1212	C	1213	G	1214	A	1215	G	1216	csS	cWW	tsS	tSH	tSs		cWW
4	IL_3U5H_059	3U5H	0.1528	1		5	25S rRNA	U	1218	C	1219	U	1220	G	1222	A	1223	C	1224	A	1225	G	1226	*	C	1283	C	1284	G	1285	A	1286	A	1287		cWW	tsS	tSH			cWW
5	IL_2QBG_042	2QBG	0.2232	1		B	23S rRNA	C	1043	C	1044	C	1045	G	1047	A	1048	C	1049	A	1050	G	1051	*	U	1108	C	1109	G	1110	A	1111	G	1112	csS	cWW	ntsS	tSH	tSs		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCUAGACAG*CCGAA	2
CAUAGACAG*UCGAG	1
CCUAGACAG*CCGAG	1
CCCAGACAG*UCGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUAGACA*CGA	3
AUAGACA*CGA	1
CCAGACA*CGA	1

Release history

Release	1.15	1.17
Date	2014-06-20	2014-09-04
Status	Updated, 1 parent	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_34363.3	Only in the parent motif
IL_34363.2 Compare	IL_2QBG_042, IL_3U5H_059, IL_1S72_043, IL_4IOA_039	IL_4CUV_060

Children motifs

Child motif	Common motif instances	Only in IL_34363.3	Only in the child motif
IL_34363.4 Compare	IL_2QBG_042, IL_4IOA_039, IL_1S72_043, IL_4CUV_060, IL_3U5H_059		IL_4W21_083

Annotations: (3)
Kink-turn (H) (2)
Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-R-R-L-cWW
Heat map statistics: Min 0.15 | Avg 0.22 | Max 0.37

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Coloring options: Nucleotide numbers

Motif IL_34363.3 Version IL_34363.3 of this group appears in releases 1.15 to 1.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_34363.3 Version IL_34363.3 of this group appears in releases 1.15 to 1.17

Download

Csv

Json