#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_3U5H_1043U5H0.24712525S rRNAC2666A2667U2668*A2686G2687G2690cWWtHScWW
2 IL_4IOA_0824IOA0.20262Isolated tHS basepair with bulgesX LSU rRNAC2276A2277A2278*U2296G2297G2300cWWntHScWW
3 IL_4A1B_1024A1B0.21182126S RRNAC2655A2656G2657*C2675G2676G2679cWWtHScWW
4 IL_3V2F_0793V2F0.09921A23S Ribosomal RNAC2081A2082G2083*C2236G2237G2239cWWtHScWW
5 IL_1S72_0761S720.00001Isolated tHS basepair with bulges (H)0 LSU rRNAC2122A2123G2124*C2269G2270G2272cWWtHScWW
6 IL_3V2F_0123V2F0.16531A23S Ribosomal RNAC288A289G290*U350G351G353cWWtHScWW
7 IL_3U5H_1003U5H0.32021525S rRNAU2423A2424G2425*U2604G2605G2607cWWtHScWW
8 IL_2QBG_0822QBG0.29071B23S rRNAU2081A2082G2083*U2236G2237G2239cWWtHScWW
9 IL_4IOA_0774IOA0.33501Isolated tHS basepair with bulgesX LSU rRNAU2064A2065G2066*C2215G2216G2218cWWtHScWW
10 IL_4BPP_0264BPP0.82691A18S RRNAC492A494C495*G477G478G479cWWtHScWW
11 IL_4BPP_0634BPP0.85990A18S RRNAA1206C1207A1208*U1221U1222U1223cWWntHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAG*CGGG2
UAG*UGGG2
CAU*AGUAG1
CAA*UGUAG1
CAG*CGUAG1
CAG*UGGG1
UAG*CGGG1
CUAC*GGG1
ACA*UUU1
Non-Watson-Crick part of the motif
SequenceCounts
A*GG6
A*GUA3
UA*G1
C*U1

Release history

Release1.61.71.81.91.101.11
Date2013-08-312013-09-282013-11-052013-12-072014-01-042014-02-01
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_37104.2Only in the child motif
IL_37104.3
Compare
IL_2QBG_082, IL_3V2F_079, IL_4IOA_082, IL_4BPP_026, IL_3U5H_104, IL_4IOA_077, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_4A1B_102IL_4BPP_063IL_1S72_078
IL_21644.1
Compare
IL_4BPP_063IL_2QBG_082, IL_3V2F_079, IL_4IOA_082, IL_4BPP_026, IL_3U5H_104, IL_4IOA_077, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_4A1B_102IL_4J5V_004
Annotations
  • (8)
  • Isolated tHS basepair with bulges (2)
  • Isolated tHS basepair with bulges (H) (1)
  • Basepair signature
    cWW-tHS-cWW
    Heat map statistics
    Min 0.10 | Avg 0.44 | Max 0.99
    Help

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