Motif IL_38186.1 Version IL_38186.1 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_098 | 4WF9 | 0.6038 | 1 | Single bulged A | X | LSU rRNA | C | 2618 | G | 2619 | * | C | 2628 | G | 2630 | cWW | cWW |
| 2 | IL_8C3A_107 | 8C3A | 0.6153 | 1 | Single bulged A | 1 | LSU rRNA | G | 2586 | G | 2587 | * | C | 2597 | C | 2599 | cWW | cWW |
| 3 | IL_1U9S_003 | 1U9S | 0.2454 | 2 | Major groove intercalation | A | RIBONUCLEASE P | U | 116 | G | 117 | * | C | 224 | A | 227 | cWW | cWW |
| 4 | IL_1NBS_009 | 1NBS | 0.2369 | 2 | Major groove intercalation | B | RNase P class B | U | 181 | G | 182 | * | U | 228 | A | 231 | cWW | cWW |
| 5 | IL_8C3A_426 | 8C3A | 0.1537 | 5 | CM | SSU rRNA | U | 1089 | C | 1090 | * | G | 614 | A | 620 | cWW | cWW | |
| 6 | IL_4V88_416 | 4V88 | 0.1469 | 5 | A6 | SSU rRNA | U | 1104 | C | 1105 | * | G | 616 | A | 622 | cWW | cWW | |
| 7 | IL_5J7L_026 | 5J7L | 0.0000 | 5 | AA | SSU rRNA | C | 880 | G | 881 | * | C | 569 | G | 575 | cWW | cWW | |
| 8 | IL_4LFB_022 | 4LFB | 0.0691 | 5 | A | SSU rRNA | C | 880 | G | 881 | * | C | 569 | G | 575 | cWW | cWW | |
| 9 | IL_6CZR_134 | 6CZR | 0.1418 | 5 | 1a | SSU rRNA | C | 858 | G | 859 | * | C | 553 | G | 559 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*CGUAAAG | 3 |
| UC*GUUAAAA | 2 |
| CG*CAG | 1 |
| GG*CAC | 1 |
| UG*CAAA | 1 |
| UG*UAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GUAAA | 3 |
| *A | 2 |
| *AA | 2 |
| *UUAAA | 2 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Major groove intercalation (2)
- Single bulged A (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.28 | Max 0.62
Coloring options: