Motif IL_38807.1 Version IL_38807.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 4-9 | 4-10 | 5-6 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_039 | 2QBG | 0.2617 | 1 | B | LSU rRNA | U | 1018 | U | 1019 | A | 1020 | A | 1021 | G | 1022 | U | 1023 | G | 1024 | * | C | 1140 | U | 1141 | A | 1142 | A | 1144 | cWW | tWH | ntHW | cSH | cWW | ||
| 2 | IL_3UXR_039 | 3UXR | 0.0000 | 2 | A | LSU rRNA | C | 1018 | U | 1019 | A | 1020 | A | 1021 | G | 1022 | U | 1023 | G | 1024 | * | C | 1140 | U | 1141 | A | 1142|||A | G | 1144 | cWW | ntWH | ntHW | ntWW | cSH | cWW | |
| 3 | IL_1S72_041 | 1S72 | 0.0858 | 2 | Kink-turn related (H) | 0 | LSU rRNA | U | 1115 | U | 1116 | A | 1117 | A | 1118 | G | 1119 | U | 1120 | G | 1121 | * | C | 1243 | U | 1244 | A | 1246 | A | 1248 | cWW | ntHW | ntWW | cSH | cWW | |
| 4 | IL_2ZJR_035 | 2ZJR | 0.1432 | 2 | X | LSU rRNA | C | 1029 | U | 1030 | C | 1031 | A | 1032 | G | 1033 | U | 1034 | G | 1035 | * | C | 1150 | U | 1151 | A | 1153 | G | 1155 | cWW | ntHW | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAGUG*CUAAA | 1 |
| CUAAGUG*CUUAAG | 1 |
| UUAAGUG*CUCAAA | 1 |
| CUCAGUG*CUCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAGU*UAA | 1 |
| UAAGU*UUAA | 1 |
| UAAGU*UCAA | 1 |
| UCAGU*UCAA | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_38807.1 | Only in the parent motif |
|---|---|---|---|
| IL_10326.2 Compare | IL_2ZJR_035, IL_1S72_041 | IL_3UXR_039, IL_2QBG_039 | IL_3PYO_038 |
| IL_59183.1 Compare | IL_2QBG_039 | IL_2ZJR_035, IL_3UXR_039, IL_1S72_041 |
Children motifs
| Child motif | Common motif instances | Only in IL_38807.1 | Only in the child motif |
|---|---|---|---|
| IL_38807.2 Compare | IL_2ZJR_035, IL_1S72_041, IL_2QBG_039 | IL_3UXR_039 | IL_3V2F_039 |
- Annotations
-
- (3)
- Kink-turn related (H) (1)
- Basepair signature
- 11_cWW-tWH--tHW-cSH--cWW
- Heat map statistics
- Min 0.09 | Avg 0.14 | Max 0.29
Coloring options: