Motif IL_38958.6 Version IL_38958.6 of this group appears in releases 3.54 to 3.79

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-5	1-6	2-5	3-4
1	IL_1L9A_004	1L9A	0.6845	0	Isolated tHS basepair with bulges	B	signal recognition particle RNA S domain	U	132	A	133	U	134	*	A	163	G	164	G	165	ncWWa	cWW	tHS	ncWW
2	IL_7A0S_080	7A0S	0.4060	2	Isolated tHS basepair with bulges	X	LSU rRNA	C	2276	A	2277	A	2278	*	U	2296	G	2297	G	2300		cWW	ntHS	cWW
3	IL_7RQB_082	7RQB	0.3408	1	Isolated tHS basepair with bulges	1A	LSU rRNA	C	2081	A	2082	G	2083	*	C	2236	G	2237	G	2239		cWW	tHS	cWW
4	IL_4V9F_076	4V9F	0.3861	1	Isolated tHS basepair with bulges	0	LSU rRNA	C	2122	A	2123	G	2124	*	C	2269	G	2270	G	2272		cWW	tHS	cWW
5	IL_7RQB_012	7RQB	0.4132	1	Isolated tHS basepair with bulges	1A	LSU rRNA	C	288	A	289	G	290	*	U	350	G	351	G	353		cWW	tHS	cWW
6	IL_5J7L_325	5J7L	0.4720	1	Isolated tHS basepair with bulges	DA	LSU rRNA	U	2081	A	2082	G	2083	*	U	2236	G	2237	G	2239		cWW	tHS	cWW
7	IL_5TBW_095	5TBW	0.4602	1	Isolated tHS basepair with bulges	1	LSU rRNA	U	2423	A	2424	G	2425	*	U	2604	G	2605	G	2607		cWW	tHS	cWW
8	IL_4WF9_082	4WF9	0.4806	1	Isolated tHS basepair with bulges	X	LSU rRNA	U	2108	A	2109	G	2110	*	C	2263	G	2264	G	2266		cWW	tHS	cWW
9	IL_7A0S_077	7A0S	0.4571	1	Isolated tHS basepair with bulges	X	LSU rRNA	U	2064	A	2065	G	2066	*	C	2215	G	2216	G	2218		cWW	ntHS	cWW
10	IL_5TBW_099	5TBW	0.4325	2	Isolated tHS basepair with bulges	1	LSU rRNA	C	2666	A	2667	U	2668	*	A	2686	G	2687	G	2690		cWW	tHS	cWW
11	IL_4WF9_086	4WF9	0.4257	2	Isolated tHS basepair with bulges	X	LSU rRNA	C	2324	A	2325	G	2326	*	C	2344	A	2345	G	2348		cWW	tHS	cWW
12	IL_4V9F_080	4V9F	0.1767	2	Isolated tHS basepair with bulges	0	LSU rRNA	C	2331	A	2332	G	2333	*	C	2351	G	2352	G	2355		cWW	tHS	cWW
13	IL_7RQB_088	7RQB	0.0000	2	Isolated tHS basepair with bulges	1A	LSU rRNA	C	2297	A	2298	G	2299	*	C	2317	G	2318	G	2321		cWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAG*CGGG	2
UAG*UGGG	2
UAG*CGGG	2
UAU*AGG	1
CAA*UGUAG	1
CAG*UGGG	1
CAU*AGUAG	1
CAG*CAUAG	1
CAG*CGAAG	1
CAG*CGGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*GG	7
A*GUA	2
A*G	1
A*AUA	1
A*GAA	1
A*GGA	1

Release history

Release	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76	3.77	3.78	3.79
Date	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08	2023-12-06	2024-01-03	2024-01-03
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Isolated tHS basepair with bulges (13)
Basepair signature: cWW-tHS-cWW
Heat map statistics: Min 0.12 | Avg 0.33 | Max 0.68

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Coloring options: Nucleotide numbers

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