Motif IL_39216.2 Version IL_39216.2 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U9S_008 | 1U9S | 0.0000 | 0 | Stack outside cWW | A | G | 195 | C | 196 | * | G | 217 | G | 218 | C | 219 | cWW | cWW |
| 2 | IL_1ET4_006 | 1ET4 | 0.2819 | 0 | C | C | 418 | C | 419 | * | G | 426 | U | 427 | G | 428 | cWW | cWW | |
| 3 | IL_1ET4_010 | 1ET4 | 0.3454 | 0 | E | C | 118 | C | 119 | * | G | 126 | U | 127 | G | 128 | cWW | cWW | |
| 4 | IL_1XOK_001 | 1XOK | 0.6393 | 1 | Major groove intercalation | A | C | 846 | U | 847 | * | A | 864 | A | 865 | G | 867 | cWW | cWW |
| 5 | IL_1XOK_002 | 1XOK | 0.9276 | 1 | Major groove intercalation | A+B | C | 868 | C | 869 | * | G | 877 | A | 878 | G | 880 | cWW | cWW |
| 6 | IL_3F1H_069 | 3F1H | 0.9323 | 1 | A | U | 1841 | G | 1842 | * | U | 1898 | G | 1899 | A | 1901 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CC*GUG | 2 |
| GC*GGC | 1 |
| CU*AAUG | 1 |
| CC*GAUG | 1 |
| UG*UGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *U | 2 |
| *AU | 2 |
| *G | 1 |
| *GA | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_39216.2 | Only in the parent motif |
|---|---|---|---|
| IL_39216.1 Compare | IL_1XOK_001, IL_1XOK_002, IL_3F1H_069, IL_1U9S_008 | IL_1ET4_006, IL_1ET4_010 | IL_1NTB_001 |
| IL_45564.1 Compare | IL_1ET4_006, IL_1ET4_010 | IL_1XOK_001, IL_1XOK_002, IL_3F1H_069, IL_1U9S_008 | IL_1FJG_028, IL_1FJG_024, IL_3F1H_089, IL_1S72_080, IL_3NKB_002, IL_1G1X_002, IL_3F1H_075, IL_2ZJR_083, IL_2ZJR_085, IL_2ZJR_086, IL_2ZJR_089, IL_1XJR_002, IL_3F1H_090, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_3F1H_008, IL_1QA6_002, IL_1S03_004, IL_1S03_008, IL_2ZJR_074, IL_3OWZ_007, IL_3OWZ_003, IL_3F1H_108 |
Children motifs
| Child motif | Common motif instances | Only in IL_39216.2 | Only in the child motif |
|---|---|---|---|
| IL_39216.3 Compare | IL_1ET4_006, IL_1ET4_010, IL_1XOK_002, IL_1XOK_001 | IL_3F1H_069, IL_1U9S_008 | |
| IL_76212.1 Compare | IL_3F1H_069, IL_1U9S_008 | IL_1XOK_001, IL_1ET4_006, IL_1XOK_002, IL_1ET4_010 | IL_1NTB_001 |
- Annotations
-
- (3)
- Major groove intercalation (2)
- Stack outside cWW (1)
- Basepair signature
- Heat map statistics
- Min 0.04 | Avg 0.50 | Max 0.93
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