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Motif IL_42589.6 Version IL_42589.6 of this group appears in releases 3.62 to 3.76

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_2ZI0_0012ZI00.72110Isolated near basepairD+CRNA (21-mer)U9U10A11*U9U10A11cWWcWW
2 IL_3NJ7_0033NJ70.60390Isolated near basepairD+CRNA (10-mer)C6A7G8*C3A4G5cWWcWW
3 IL_3NJ7_0043NJ70.60290Isolated near basepairC+DRNA (10-mer)C6A7G8*C3A4G5cWWcWW
4 IL_7A0S_0307A0S0.61540Isolated near basepairX LSU rRNAA883C884A885*U917A918U919cWWcWW
5 IL_7A0S_0387A0S0.60171Isolated non-canonical cWW pairX LSU rRNAG1042A1043G1045*C1132G1133C1134cWWncWWcWW
6 IL_4WF9_0414WF90.59731Isolated non-canonical cWW pairX LSU rRNAG1075A1076G1078*C1165G1166C1167cWWncWWcWW
7 IL_2D6F_0012D6F0.52640Self complementaryFtRNAC927U928G929*C941G942G943cWWncWWcWW
8 IL_364D_004364D0.64290Self complementaryB+CRNA (19-mer) + RNA (31-mer)G79U80G81*U95G96C97cWWncWWcWW
9 IL_406D_002406D0.26430Isolated cWH basepairE+ARNA (17-mer)U25||AG26||AG27||A*U8||AG9||AG10||AcWWncHWcWW
10 IL_4V88_4274V880.27300Isolated cWH basepairA6 SSU rRNAU822G823G824*C848C849A850cWWncHWcWW
11 IL_4V88_4534V880.28080Isolated cWH basepairA6 SSU rRNAU1290G1291G1292*C1323G1324A1325cWWcHWcWW
12 IL_4WF9_0454WF90.28280Isolated cWH basepairX LSU rRNAC1277G1278C1279*G1243G1244G1245cWWcHWcWW
13 IL_3CZW_0013CZW0.11300Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||2_555G11||||2_555A12||||2_555cWWcHWcWW
14 IL_3CZW_0023CZW0.11300Isolated cWH basepairXRNA (16-mer)U7||||2_555G8||||2_555A9||||2_555*U10G11A12cWWcHWcWW
15 IL_3R1C_0323R1C0.06100Isolated cWH basepairF+ERNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
16 IL_4KQ0_0034KQ00.08030Isolated cWH basepairB+ERNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
17 IL_3SJ2_0013SJ20.00000Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
18 IL_3SJ2_0033SJ20.05930Isolated cWH basepairB+ARNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
19 IL_3R1C_0183R1C0.06410Isolated cWH basepairQ+RRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
20 IL_3R1C_0123R1C0.05800Isolated cWH basepairL+KRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
21 IL_3R1C_0113R1C0.06350Isolated cWH basepairK+LRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
22 IL_3SJ2_0023SJ20.05540Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C10G11G12*C10G11G12cWWcHWcWW
23 IL_3R1C_0173R1C0.07380Isolated cWH basepairR+QRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
24 IL_3R1C_0313R1C0.07670Isolated cWH basepairF+ERNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
25 IL_4E5C_0014E5C0.08550Isolated cWH basepairB+ARNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
26 IL_3R1D_0023R1D0.14920Isolated cWH basepairA+BRNA (11-mer)C5G6G7*C5G6G7cWWcHWcWW
27 IL_4KQ0_0014KQ00.11410Isolated cWH basepairB+ERNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
28 IL_4KQ0_0054KQ00.11370Isolated cWH basepairE+BRNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
29 IL_6IA2_0036IA20.15850Isolated cWH basepairA+BRNA (19-mer)C9G10||AG11*C9G10||AG11||AcWWcHWcWW
30 IL_4KQ0_0024KQ00.13580Isolated cWH basepairB+ERNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
31 IL_4KQ0_0044KQ00.13660Isolated cWH basepairE+BRNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
32 IL_6RA4_0026RA40.21460Isolated cWH basepairL+MRNA (9-mer)U403G404A405*U403G404A405cWWcHWcWW
33 IL_3D0M_0013D0M0.25310Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||16_545G11||||16_545A12||||16_545cWWcHWncWW
34 IL_3D0M_0023D0M0.25310Isolated cWH basepairXRNA (16-mer)U7||||16_545G8||||16_545A9||||16_545*U10G11A12cWWcHWncWW
35 IL_3W3S_0033W3S0.35700Isolated cWH basepairBSelenocysteine transfer RNAG47|||AG47|||BU47|||C*A47|||NG47|||OC47|||PcWWcHWcWW
36 IL_4V88_4054V880.39000Isolated cWH basepairA6 SSU rRNAG389G390A391*U406A407C408cWWcHWcWW
37 IL_2W2H_0022W2H0.45590Isolated cWH basepairRRNA (21-mer)G17U18C19*G8A9U10ncWWncWWcWW
38 IL_4J39_0014J390.64330Isolated non-canonical cWW pairBRNA (19-mer)G9||||4_555C10||||4_555C11||||4_555*G9C10C11cWWcWW
39 IL_6F4H_0016F4H0.81230Isolated cWH basepairDU1-SL2G20C21C22*G1G2C3cWWncWHcWW
40 IL_1L9A_0071L9A0.82950Isolated cWH basepairBsignal recognition particle RNA S domainG210U211C212*G187G188C189cWWcWW
41 IL_5F5F_0015F5F0.81990Isolated cWH basepairBRNA (20-mer)G14G15A16*U5G6C7cWWcWHcWW
42 IL_5F5F_0035F5F0.81260Isolated cWH basepairFRNA (20-mer)G14G15A16*U5G6C7cWWcWHcWW
43 IL_5J7L_0115J7L0.77100Isolated cWH basepairAA SSU rRNAG144G145G146*C176G177C178cWWcWHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG17
UGA*UGA5
CAG*CAG2
GAUG*CGC2
GGA*UGC2
UUA*UUA1
ACA*UAU1
CUG*CGG1
GUG*UGC1
UGG*UGG1
UGG*CCA1
UGG*CGA1
CGC*GGG1
GGU*AGC1
GGA*UAC1
GUC*GAU1
GCC*GCC1
GCC*GGC1
GUC*GGC1
GGG*CGC1
Non-Watson-Crick part of the motif
SequenceCounts
G*G29
U*G3
A*A2
AU*G2
U*U1
C*A1
G*C1
G*A1
U*A1
C*C1
C*G1

Release history

Release3.623.633.643.653.663.673.683.693.703.713.723.733.743.753.76
Date2022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-08
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (34)
  • Isolated near basepair (4)
  • Isolated non-canonical cWW pair (3)
  • Self complementary (2)
    • Basepair signature
    cWW-cHW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.46 | Max 0.94
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