Motif IL_43113.1 Version IL_43113.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3P49_012 | 3P49 | 0.0000 | 1 | A | Glycine riboswitch | G | 116 | C | 117 | A | 118 | A | 119 | A | 120 | G | 121 | * | C | 132 | C | 133 | U | 134 | A | 135 | A | 136 | C | 138 | cWW | tWH | ncWW | cWW | |
| 2 | IL_1S72_057 | 1S72 | 0.2977 | 1 | 0 | LSU rRNA | C | 1578 | C | 1579 | A | 1580 | A | 1581 | C | 1582 | U | 1583 | * | A | 1612 | C | 1613 | G | 1614 | A | 1615 | A | 1616 | G | 1618 | cWW | ntWH | tHS | ncBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAAG*CCUAAAC | 1 |
| CCAACU*ACGAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAA*CUAAA | 1 |
| CAAC*CGAAC | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_43113.1 | Only in the parent motif |
|---|---|---|---|
| IL_54826.1 Compare | IL_1S72_057 | IL_3P49_012 | IL_3B5F_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_43113.1 | Only in the child motif |
|---|---|---|---|
| IL_80494.1 Compare | IL_3P49_012, IL_1S72_057 | IL_4A1B_017, IL_3B5F_001 |
Coloring options: