Motif IL_80494.1 Version IL_80494.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3B5F_001 | 3B5F | 0.8995 | 0 | A+B | Loop A Substrate strand + 29-mer Loop A and Loop B Ribozyme strand | C | 4 | A | 5 | G | 6 | U | 7 | C | 8 | C | 9 | * | G | 6 | A | 7 | G | 8 | A | 9 | A | 10 | G | 11 | cWW | tSH | tHS | ncWWa | cWW | |
| 2 | IL_3P49_012 | 3P49 | 0.9205 | 1 | A | Glycine riboswitch | G | 116 | C | 117 | A | 118 | A | 119 | A | 120 | G | 121 | * | C | 132 | C | 133 | U | 134 | A | 135 | A | 136 | C | 138 | cWW | tWH | ncWW | cWW | ||
| 3 | IL_4A1B_017 | 4A1B | 0.2977 | 0 | 1 | 26S RRNA | C | 516 | A | 517 | G | 518 | A | 519 | A | 520 | C | 521 | * | G | 457 | G | 458 | G | 459 | A | 460 | A | 461 | G | 462 | cWW | ntHS | cWW | |||
| 4 | IL_1S72_057 | 1S72 | 0.0000 | 1 | 0 | LSU rRNA | C | 1578 | C | 1579 | A | 1580 | A | 1581 | C | 1582 | U | 1583 | * | A | 1612 | C | 1613 | G | 1614 | A | 1615 | A | 1616 | G | 1618 | cWW | ntWH | tHS | ncBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUCC*GAGAAG | 1 |
| GCAAAG*CCUAAAC | 1 |
| CAGAAC*GGGAAG | 1 |
| CCAACU*ACGAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUC*AGAA | 1 |
| CAAA*CUAAA | 1 |
| AGAA*GGAA | 1 |
| CAAC*CGAAC | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_80494.1 | Only in the parent motif |
|---|---|---|---|
| IL_43113.1 Compare | IL_3P49_012, IL_1S72_057 | IL_4A1B_017, IL_3B5F_001 | |
| IL_37987.1 Compare | IL_3B5F_001 | IL_4A1B_017, IL_3P49_012, IL_1S72_057 |
Children motifs
| Child motif | Common motif instances | Only in IL_80494.1 | Only in the child motif |
|---|---|---|---|
| IL_80494.2 Compare | IL_3P49_012, IL_1S72_057, IL_3B5F_001 | IL_4A1B_017 | |
| IL_92321.2 Compare | IL_4A1B_017 | IL_3P49_012, IL_1S72_057, IL_3B5F_001 | IL_2ZJR_026, IL_2AW7_059, IL_3U5F_079, IL_4A1B_037, IL_3U5H_027, IL_1FJG_053, IL_2XZM_080 |
- Annotations
-
- (4)
- Basepair signature
- 12_cWW-tWH--tHS-bif-cWW
- Heat map statistics
- Min 0.30 | Avg 0.55 | Max 0.92
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