Motif IL_43877.1 Version IL_43877.1 of this group appears in releases 1.10 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | 5-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_012 | 3U5F | 0.0000 | 0 | 6 | 18S rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW | |
| 2 | IL_3U5F_006 | 3U5F | 0.8192 | 3 | 6 | 18S rRNA | C | 87 | U | 88 | G | 89 | * | U | 58 | C | 59 | G | 63 | cWW | cWW | ncWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGU*AGA | 1 |
| CUG*UCUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 1 |
| U*CUAA | 1 |
Release history
| Release | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|
| Date | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_43877.1 | Only in the parent motif |
|---|---|---|---|
| IL_15709.1 Compare | IL_3U5F_012 | IL_3U5F_006 | IL_3U5F_093, IL_3U5H_085, IL_4A1B_081 |
| IL_68880.1 Compare | IL_3U5F_006 | IL_3U5F_012 | IL_4BPP_006 |
Children motifs
| Child motif | Common motif instances | Only in IL_43877.1 | Only in the child motif |
|---|---|---|---|
| IL_71837.1 Compare | IL_3U5F_006 | IL_3U5F_012 | IL_2QBG_040, IL_4BPP_006, IL_3U5H_085, IL_4A1C_001, IL_1S72_062, IL_4A1B_081, IL_4IOA_037 |
| IL_66654.1 Compare | IL_3U5F_012 | IL_3U5F_006 | IL_4JK0_003, IL_4M4O_004, IL_4M6D_013 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.82 | Avg 0.41 | Max 0.82
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