#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-32-53-4
1 IL_3U5F_0063U5F0.89543618S rRNAU58C59G63*C87U88G89cWWncWHcWW
2 IL_4BPP_0064BPP0.92763A18S RRNAU57G58G62*C83U84G85cWWcWHcWW
3 IL_4IOA_0374IOA0.85431Isolated non-canonical cWW (H)X LSU rRNAG1042A1043G1045*C1132G1133C1134cWWcWWcWW
4 IL_2QBG_0402QBG0.84471B23S rRNAG1031A1032G1034*C1121G1122C1123cWWcWWcWW
5 IL_1S72_0621S720.00004Intercalated tWH (H)0 LSU rRNAA1747U1748G1752*C2031U2032U2034cWWcWW
6 IL_4A1B_0814A1B0.15964126S RRNAA1925G1926G1930*C2328U2329U2331cWWcWW
7 IL_3U5H_0853U5H0.16634525S rRNAA1901G1902G1906*C2333U2334U2336cWWcWW
8 IL_4A1C_0014A1C0.8829125.8S RRNAC67A68A69*U94C95G97cWWncWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUG*CGC2
AGUCGG*CUGU2
UCUAAG*CUG1
UGCCAG*CUG1
AUUCGG*CUGU1
CAA*UCAG1
Non-Watson-Crick part of the motif
SequenceCounts
AU*G2
GUCG*UG2
CUAA*U1
GCCA*U1
UUCG*UG1
A*CA1

Release history

Release1.14
Date2014-04-27
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_71837.1Only in the parent motif
IL_90459.3
Compare
IL_2QBG_040, IL_4A1C_001, IL_4IOA_037IL_3U5H_085, IL_3U5F_006, IL_4BPP_006, IL_1S72_062, IL_4A1B_081IL_3U5F_074, IL_1S72_085, IL_2Y9B_001, IL_4A1B_129, IL_3V2F_041, IL_3U5H_138
IL_70173.1
Compare
IL_3U5H_085, IL_4A1B_081IL_2QBG_040, IL_4BPP_006, IL_3U5F_006, IL_4A1C_001, IL_1S72_062, IL_4IOA_037IL_3U5F_093, IL_4M4O_004, IL_3BNL_002, IL_4M6D_013
IL_82444.1
Compare
IL_1S72_062IL_2QBG_040, IL_4BPP_006, IL_3U5F_006, IL_3U5H_085, IL_4A1C_001, IL_4A1B_081, IL_4IOA_037IL_420D_002, IL_420D_001, IL_4BPP_020, IL_3V2F_064, IL_2AW7_011, IL_2QEK_002, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_2QBG_065, IL_3NJ7_001, IL_4E5C_001, IL_4BPP_012, IL_4IOA_029, IL_3U5H_072, IL_3U5F_070, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_4KYY_002, IL_3U5H_151, IL_3CZW_002, IL_3CZW_001, IL_2R22_001, IL_2XXA_011
IL_43877.1
Compare
IL_3U5F_006IL_2QBG_040, IL_4BPP_006, IL_3U5H_085, IL_4A1C_001, IL_1S72_062, IL_4A1B_081, IL_4IOA_037IL_3U5F_012
IL_99397.1
Compare
IL_4BPP_006IL_2QBG_040, IL_4A1C_001, IL_3U5F_006, IL_3U5H_085, IL_1S72_062, IL_4A1B_081, IL_4IOA_037

Children motifs

Child motifCommon motif instancesOnly in IL_71837.1Only in the child motif
IL_25549.1
Compare
IL_2QBG_040, IL_4A1C_001, IL_4IOA_037IL_3U5H_085, IL_3U5F_006, IL_4BPP_006, IL_1S72_062, IL_4A1B_081IL_4CUX_009, IL_3U5H_138, IL_4CUV_144, IL_4A1B_129, IL_1S72_085, IL_2Y9B_001
IL_32987.1
Compare
IL_3U5H_085, IL_3U5F_006, IL_4A1B_081IL_4BPP_006, IL_2QBG_040, IL_1S72_062, IL_4A1C_001, IL_4IOA_037IL_3U5F_012, IL_4CUV_084, IL_4CUX_067, IL_4CUX_036
IL_43284.1
Compare
IL_4BPP_006IL_2QBG_040, IL_4A1C_001, IL_3U5F_006, IL_3U5H_085, IL_1S72_062, IL_4A1B_081, IL_4IOA_037
IL_83000.1
Compare
IL_1S72_062IL_2QBG_040, IL_4BPP_006, IL_3U5F_006, IL_3U5H_085, IL_4A1C_001, IL_4A1B_081, IL_4IOA_037IL_4CUV_026, IL_4CUV_020, IL_3TD0_002, IL_3KTW_002, IL_1FJG_010, IL_2AW7_052, IL_4IOA_010, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_4FNJ_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_2O3V_001, IL_4IOA_078, IL_4J5V_003, IL_4J5V_002, IL_4J5V_001, IL_4CUX_069, IL_2QBG_020, IL_4J5V_006, IL_4J5V_005, IL_3SZX_001, IL_4KNQ_001, IL_4KNQ_002, IL_4KNQ_004, IL_4KNQ_005, IL_157D_002, IL_157D_001, IL_4CUV_139, IL_1ZH5_001, IL_4CUV_133, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_4CUX_083, IL_4BPP_015, IL_4BPP_068, IL_4E59_001, IL_4CUX_089, IL_4CUV_156, IL_4A1B_048, IL_2QBG_018, IL_1VW3_079, IL_4JK0_001, IL_2O3X_004, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_3GLP_001, IL_4BPP_056, IL_3BNL_004, IL_4CUX_015, IL_3U5F_015, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_3U5H_017, IL_4E48_003, IL_4E48_002, IL_3CUN_002, IL_3FO4_001, IL_4BPP_002, IL_1XJR_003, IL_4BPP_001, IL_2QBG_083, IL_4IOA_054, IL_3U5F_082, IL_4BPP_038, IL_1VW3_009, IL_3U5H_008, IL_2QEK_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_1VW3_001, IL_4CUV_032, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_3U5F_023, IL_4JK0_002, IL_2O3V_004, IL_4NVV_067, IL_4JK0_005, IL_4CUX_003, IL_3U5H_087, IL_4K31_003, IL_1S72_047, IL_4BPP_073, IL_4BPP_070, IL_3NJ7_002, IL_4K31_002, IL_4K31_001, IL_2Q1R_002, IL_4BPP_079, IL_4CUV_074, IL_4IOA_104, IL_4A1B_061, IL_4J5V_007, IL_1VW3_016, IL_4K31_004, IL_4IOA_109, IL_4IOA_025, IL_4NVV_043, IL_4KYY_001, IL_4KYY_003, IL_4NGF_002, IL_4NVV_055, IL_4CUX_034, IL_4BPP_082, IL_4BPP_083, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_4JK0_004, IL_3U5F_036, IL_3U5H_028, IL_4CUV_008, IL_3UMY_001, IL_5MSF_001, IL_1ZX7_002, IL_4A1C_009, IL_1VW3_068, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_1VW3_015, IL_4IOA_030, IL_3BNQ_001, IL_3U5F_089, IL_1MFQ_003, IL_3BNQ_006, IL_1MFQ_002, IL_4CUX_022, IL_4CUX_023, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_4BPP_034, IL_3IVK_004, IL_405D_002, IL_4CUV_086, IL_1MWL_004, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_4CUV_118, IL_1MZP_001, IL_1UN6_005, IL_3U5H_036, IL_4AOB_005, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1VW3_031, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_4CUV_122, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3SYW_001, IL_2QBG_030, IL_1FJG_006, IL_3U5H_022, IL_3U5H_076, IL_3MEI_002, IL_4NVV_036, IL_1RPU_001, IL_4A1B_015, IL_1YZ9_001, IL_4CUV_047, IL_4CUV_049, IL_4A1B_034, IL_4NVV_093, IL_4IOA_013, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_4IOA_019, IL_3U5H_121, IL_1U6B_005, IL_4M6D_011, IL_1VW3_043, IL_1S72_024, IL_4CUV_052, IL_3U5F_063, IL_3U5F_061, IL_3U5H_044, IL_1FJG_044, IL_1VW3_049, IL_2QBG_096, IL_4CUX_040, IL_4BPP_058, IL_3SZX_002, IL_3SZX_003, IL_4CUX_044, IL_2QBG_065, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_4BPP_088, IL_4FNJ_002, IL_4A1B_083, IL_3TD0_005, IL_4NVV_083, IL_3TD0_006, IL_3TD0_001, IL_1VW3_092, IL_1ZX7_008, IL_1U6B_001, IL_4A1B_027, IL_4A1B_024, IL_4M4O_001, IL_4BPP_037, IL_4CUV_039, IL_4IOA_044, IL_4NVV_016, IL_3U5H_114, IL_4CUV_030, IL_3U5H_116, IL_3U5H_118, IL_4CUX_091, IL_3U5F_074, IL_3U5H_051, IL_2QBG_034, IL_4A1B_028, IL_3U5F_072, IL_4KYY_002, IL_2Q1R_001, IL_4A1B_104, IL_1FJG_058, IL_4M4O_002, IL_4CUX_073, IL_1U9S_007, IL_4CUV_120, IL_4IOA_091, IL_4NVV_019, IL_3U5H_049, IL_2AW7_062
Annotations
  • (6)
  • Intercalated tWH (H) (1)
  • Isolated non-canonical cWW (H) (1)
  • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.66 | Max 1.09
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