Motif IL_15709.1 Version IL_15709.1 of this group appears in releases 1.6 to 1.9
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_081 | 4A1B | 0.0809 | 4 | 1 | 26S RRNA | C | 2328 | U | 2329 | U | 2331 | * | A | 1925 | G | 1926 | G | 1930 | cWW | cWW |
| 2 | IL_3U5H_085 | 3U5H | 0.0000 | 4 | 5 | 25S rRNA | C | 2333 | U | 2334 | U | 2336 | * | A | 1901 | G | 1902 | G | 1906 | cWW | cWW |
| 3 | IL_3U5F_093 | 3U5F | 0.8334 | 0 | 6 | 18S rRNA | U | 1688 | A | 1689 | G | 1690 | * | C | 1711 | A | 1712 | G | 1713 | ncWW | ncWW |
| 4 | IL_3U5F_012 | 3U5F | 0.8781 | 0 | 6 | 18S rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGU*AGUCGG | 2 |
| UAG*CAG | 1 |
| UGU*AGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UG*GUCG | 2 |
| A*A | 1 |
| G*G | 1 |
Release history
| Release | 1.6 | 1.7 | 1.8 | 1.9 |
|---|---|---|---|---|
| Date | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_15709.1 | Only in the parent motif |
|---|---|---|---|
| IL_40090.5 Compare | IL_3U5F_093, IL_3U5H_085, IL_4A1B_081 | IL_3U5F_012 | IL_1S72_046, IL_3U5H_052, IL_2QBG_045, IL_4IOA_043, IL_3U5H_062, IL_3V2F_030, IL_3V2F_042 |
| IL_12685.1 Compare | IL_3U5F_012 | IL_3U5F_093, IL_3U5H_085, IL_4A1B_081 | IL_3U5F_006 |
Children motifs
| Child motif | Common motif instances | Only in IL_15709.1 | Only in the child motif |
|---|---|---|---|
| IL_70173.1 Compare | IL_3U5F_093, IL_3U5H_085, IL_4A1B_081 | IL_3U5F_012 | IL_4M4O_004, IL_3BNL_002, IL_4M6D_013 |
| IL_43877.1 Compare | IL_3U5F_012 | IL_3U5F_093, IL_3U5H_085, IL_4A1B_081 | IL_3U5F_006 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.54 | Max 0.88
Coloring options: