Motif IL_68880.1 Version IL_68880.1 of this group appears in releases 1.6 to 1.9
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 2-6 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_006 | 3U5F | 0.0000 | 0 | 6 | 18S rRNA | U | 58 | C | 59 | U | 60 | A | 61 | A | 62 | G | 63 | * | C | 87 | U | 88 | G | 89 | cWW | ncWH | cWW |
| 2 | IL_4BPP_006 | 4BPP | 0.2227 | 0 | A | 18S RRNA | U | 57 | G | 58 | C | 59 | C | 60 | A | 61 | G | 62 | * | C | 83 | U | 84 | G | 85 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAAG*CUG | 1 |
| UGCCAG*CUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAA*U | 1 |
| GCCA*U | 1 |
Release history
| Release | 1.6 | 1.7 | 1.8 | 1.9 |
|---|---|---|---|---|
| Date | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_68880.1 | Only in the parent motif |
|---|---|---|---|
| IL_12685.1 Compare | IL_3U5F_006 | IL_4BPP_006 | IL_3U5F_012 |
| IL_99438.1 Compare | IL_4BPP_006 | IL_3U5F_006 |
Children motifs
| Child motif | Common motif instances | Only in IL_68880.1 | Only in the child motif |
|---|---|---|---|
| IL_99397.1 Compare | IL_4BPP_006 | IL_3U5F_006 | |
| IL_43877.1 Compare | IL_3U5F_006 | IL_4BPP_006 | IL_3U5F_012 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-cWH-L-L-L-cWW
- Heat map statistics
- Min 0.22 | Avg 0.11 | Max 0.22
Coloring options: