Motif IL_45564.2 Version IL_45564.2 of this group appears in releases 0.2 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-3 | 2-4 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3OWZ_007 | 3OWZ | 0.7665 | 0 | B | Domain II of glycine riboswitch | C | 68 | U | 69 | C | 70 | * | G | 35 | G | 36 | cWW | cSH | cWW | ||
2 | IL_3OWZ_003 | 3OWZ | 0.5455 | 0 | A | Domain II of glycine riboswitch | C | 68 | U | 69 | C | 70 | * | G | 35 | G | 36 | cWW | cSH | cWW | ||
3 | IL_2ZJR_089 | 2ZJR | 0.4530 | 0 | X | LSU rRNA | U | 2559 | G | 2560 | G | 2561 | * | C | 2486 | G | 2487 | cWW | chH | ncWW | ||
4 | IL_2ZJR_074 | 2ZJR | 0.3740 | 0 | Major groove platform (H) | X | LSU rRNA | C | 2033 | A | 2034 | G | 2035 | * | C | 2596 | G | 2597 | cWW | ncSH | cWW | |
5 | IL_3F1H_090 | 3F1H | 0.4669 | 0 | A | 23S RRNA | U | 2457 | G | 2458 | A | 2459 | * | U | 2493 | G | 2494 | cWW | tSH | cWW | ||
6 | IL_2ZJR_085 | 2ZJR | 0.4354 | 0 | Major groove platform (H) | X | LSU rRNA | C | 2475 | A | 2476 | C | 2477 | * | G | 2433 | G | 2434 | cWW | ncSH | cWW | |
7 | IL_1QA6_004 | 1QA6 | 0.3113 | 1 | D | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | G | 137 | A | 139 | A | 140 | * | U | 151 | C | 152 | cWW | cSH | ntSH | cWW | |
8 | IL_1S03_008 | 1S03 | 0.3189 | 0 | Major groove platform | B | 47-MER | C | 34 | A | 35 | A | 36 | * | U | 16 | G | 17 | cWW | cSH | tSH | cWW |
9 | IL_3F1H_108 | 3F1H | 0.4815 | 0 | B | 5S RRNA | C | 65 | A | 66 | G | 67 | * | C | 17 | G | 18 | cWW | cWW | |||
10 | IL_3NKB_002 | 3NKB | 0.4848 | 0 | Major groove platform | B | The hepatitis delta virus ribozyme | G | 55 | U | 56 | A | 57 | * | U | 47 | C | 48 | cWW | cSH | cWW | |
11 | IL_3F1H_075 | 3F1H | 0.4611 | 0 | A | 23S RRNA | C | 2050 | A | 2051 | G | 2052 | * | C | 2617 | G | 2618 | cWW | cSH | cWW | ||
12 | IL_3F1H_008 | 3F1H | 0.4600 | 0 | A | 23S RRNA | U | 363|||F | A | 363|||G | C | 364 | * | G | 273|||A | G | 273|||B | cWW | ncSH | cWW | ||
13 | IL_3F1H_089 | 3F1H | 0.4650 | 0 | A | 23S RRNA | C | 2496 | A | 2497 | C | 2498 | * | G | 2454 | G | 2455 | cWW | ncSH | cWW | ||
14 | IL_2ZJR_083 | 2ZJR | 0.4299 | 0 | Major groove platform (H) | X | LSU rRNA | U | 2380 | A | 2381 | C | 2382 | * | G | 2393 | G | 2394 | cWW | ncSH | cWW | |
15 | IL_2ZJR_086 | 2ZJR | 0.4436 | 0 | X | LSU rRNA | U | 2436 | G | 2437 | A | 2438 | * | U | 2472 | G | 2473 | ncWW | tSH | cWW | ||
16 | IL_1S72_080 | 1S72 | 0.3230 | 0 | Major groove platform (H) | 0 | LSU rRNA | U | 2531 | A | 2532 | C | 2533 | * | G | 2489 | A | 2490 | cWW | cSH | cWW | |
17 | IL_1QA6_002 | 1QA6 | 0.2947 | 1 | C | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | G | 137 | A | 139 | A | 140 | * | U | 151 | C | 152 | cWW | cSH | ntSH | cWW | |
18 | IL_1I6U_003 | 1I6U | 0.2801 | 0 | D | 16S RRNA FRAGMENT | U | 9 | A | 10 | A | 11 | * | U | 28 | G | 29 | cWW | cSH | ntSH | cWW | |
19 | IL_1I6U_001 | 1I6U | 0.2761 | 0 | Major groove platform | C | 16S RRNA FRAGMENT | U | 9 | A | 10 | A | 11 | * | U | 28 | G | 29 | cWW | cSH | ntSH | cWW |
20 | IL_1S03_004 | 1S03 | 0.3149 | 0 | Major groove platform | A | 47-MER | C | 34 | A | 35 | A | 36 | * | U | 16 | G | 17 | cWW | cSH | tSH | cWW |
21 | IL_1XJR_002 | 1XJR | 0.3613 | 0 | Major groove platform | A | s2m RNA | U | 37 | A | 38 | C | 39 | * | G | 13 | G | 14 | cWW | cSH | cWW | |
22 | IL_1FJG_024 | 1FJG | 0.0000 | 0 | Major groove platform (H) | A | SSU rRNA | G | 594 | G | 595 | C | 596 | * | G | 644 | C | 645 | cWW | ncSH | ntSH | cWW |
23 | IL_1FJG_028 | 1FJG | 0.2449 | 0 | Major groove platform (H) | A | SSU rRNA | C | 747 | C | 748 | C | 749 | * | G | 657 | G | 658 | cWW | ncSH | cWW | |
24 | IL_1G1X_002 | 1G1X | 0.2450 | 0 | Major groove platform | E+D | 16S RIBOSOMAL RNA | C | 747 | C | 748 | C | 749 | * | G | 657 | G | 658 | cWW | ncSH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUC*GG | 2 |
CAG*CG | 2 |
UGA*UG | 2 |
GAAA*UC | 2 |
CAA*UG | 2 |
UAC*GG | 2 |
UAA*UG | 2 |
CCC*GG | 2 |
UGG*CG | 1 |
CAC*GG | 1 |
CG*CAG | 1 |
GUA*UC | 1 |
GG*UAC | 1 |
GG*CAC | 1 |
UAC*GA | 1 |
GGC*GC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A* | 10 |
G* | 4 |
U* | 3 |
*A | 3 |
AA* | 2 |
C* | 2 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_45564.2 | Only in the parent motif |
---|---|---|---|
IL_45564.1 Compare | IL_1FJG_028, IL_1FJG_024, IL_3F1H_089, IL_1S72_080, IL_3NKB_002, IL_1G1X_002, IL_3F1H_075, IL_2ZJR_083, IL_2ZJR_085, IL_2ZJR_086, IL_2ZJR_089, IL_1XJR_002, IL_3F1H_090, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_3F1H_008, IL_1QA6_002, IL_1S03_004, IL_1S03_008, IL_3F1H_108, IL_3OWZ_007, IL_3OWZ_003, IL_2ZJR_074 | IL_1ET4_006, IL_1ET4_010 |
Children motifs
Child motif | Common motif instances | Only in IL_45564.2 | Only in the child motif |
---|---|---|---|
IL_45564.3 Compare | IL_1FJG_028, IL_1FJG_024, IL_3F1H_089, IL_1S72_080, IL_3NKB_002, IL_1G1X_002, IL_3F1H_075, IL_2ZJR_083, IL_2ZJR_085, IL_2ZJR_086, IL_2ZJR_089, IL_1XJR_002, IL_3F1H_090, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_3F1H_008, IL_1QA6_002, IL_1S03_004, IL_1S03_008, IL_3F1H_108, IL_3OWZ_007, IL_3OWZ_003, IL_2ZJR_074 | IL_2ZJR_098, IL_3F1H_103 |
- Annotations
-
- (12)
- Major groove platform (H) (6)
- Major groove platform (6)
- Basepair signature
- Heat map statistics
- Min 0.00 | Avg 0.36 | Max 0.81
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