#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-32-43-4
1 IL_3OWZ_0073OWZ0.76650BDomain II of glycine riboswitchC68U69C70*G35G36cWWcSHcWW
2 IL_3OWZ_0033OWZ0.54550ADomain II of glycine riboswitchC68U69C70*G35G36cWWcSHcWW
3 IL_2ZJR_0892ZJR0.45300X LSU rRNAU2559G2560G2561*C2486G2487cWWchHncWW
4 IL_2ZJR_0742ZJR0.37400Major groove platform (H)X LSU rRNAC2033A2034G2035*C2596G2597cWWncSHcWW
5 IL_3F1H_0903F1H0.46690A23S RRNAU2457G2458A2459*U2493G2494cWWtSHcWW
6 IL_2ZJR_0852ZJR0.43540Major groove platform (H)X LSU rRNAC2475A2476C2477*G2433G2434cWWncSHcWW
7 IL_1QA6_0041QA60.31131D58 NUCLEOTIDE RIBOSOMAL RNA DOMAING137A139A140*U151C152cWWcSHntSHcWW
8 IL_1S03_0081S030.31890Major groove platformB47-MERC34A35A36*U16G17cWWcSHtSHcWW
9 IL_3F1H_1083F1H0.48150B5S RRNAC65A66G67*C17G18cWWcWW
10 IL_3NKB_0023NKB0.48480Major groove platformBThe hepatitis delta virus ribozymeG55U56A57*U47C48cWWcSHcWW
11 IL_3F1H_0753F1H0.46110A23S RRNAC2050A2051G2052*C2617G2618cWWcSHcWW
12 IL_3F1H_0083F1H0.46000A23S RRNAU363|||FA363|||GC364*G273|||AG273|||BcWWncSHcWW
13 IL_3F1H_0893F1H0.46500A23S RRNAC2496A2497C2498*G2454G2455cWWncSHcWW
14 IL_2ZJR_0832ZJR0.42990Major groove platform (H)X LSU rRNAU2380A2381C2382*G2393G2394cWWncSHcWW
15 IL_2ZJR_0862ZJR0.44360X LSU rRNAU2436G2437A2438*U2472G2473ncWWtSHcWW
16 IL_1S72_0801S720.32300Major groove platform (H)0 LSU rRNAU2531A2532C2533*G2489A2490cWWcSHcWW
17 IL_1QA6_0021QA60.29471C58 NUCLEOTIDE RIBOSOMAL RNA DOMAING137A139A140*U151C152cWWcSHntSHcWW
18 IL_1I6U_0031I6U0.28010D16S RRNA FRAGMENTU9A10A11*U28G29cWWcSHntSHcWW
19 IL_1I6U_0011I6U0.27610Major groove platformC16S RRNA FRAGMENTU9A10A11*U28G29cWWcSHntSHcWW
20 IL_1S03_0041S030.31490Major groove platformA47-MERC34A35A36*U16G17cWWcSHtSHcWW
21 IL_1XJR_0021XJR0.36130Major groove platformAs2m RNAU37A38C39*G13G14cWWcSHcWW
22 IL_1FJG_0241FJG0.00000Major groove platform (H)A SSU rRNAG594G595C596*G644C645cWWncSHntSHcWW
23 IL_1FJG_0281FJG0.24490Major groove platform (H)A SSU rRNAC747C748C749*G657G658cWWncSHcWW
24 IL_1G1X_0021G1X0.24500Major groove platformE+D16S RIBOSOMAL RNAC747C748C749*G657G658cWWncSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUC*GG2
CAG*CG2
UGA*UG2
GAAA*UC2
CAA*UG2
UAC*GG2
UAA*UG2
CCC*GG2
UGG*CG1
CAC*GG1
CG*CAG1
GUA*UC1
GG*UAC1
GG*CAC1
UAC*GA1
GGC*GC1
Non-Watson-Crick part of the motif
SequenceCounts
A*10
G*4
U*3
*A3
AA*2
C*2
Annotations
  • (12)
  • Major groove platform (H) (6)
  • Major groove platform (6)
  • Basepair signature
    Heat map statistics
    Min 0.00 | Avg 0.36 | Max 0.81
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