IL_45564.3

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_2ZJR_085	2ZJR	0.4176	1	Major groove platform (H)	X	LSU rRNA	C	2475	C	2477	*	G	2433	G	2434	cWW	cWW
2	IL_2ZJR_083	2ZJR	0.4149	1	Major groove platform (H)	X	LSU rRNA	U	2380	C	2382	*	G	2393	G	2394	cWW	cWW
3	IL_1FJG_024	1FJG	0.0000	1	Major groove platform (H)	A	SSU rRNA	G	594	C	596	*	G	644	C	645	cWW	cWW
4	IL_1S72_080	1S72	0.2137	1	Major groove platform (H)	0	LSU rRNA	U	2531	C	2533	*	G	2489	A	2490	cWW	cWW
5	IL_1FJG_028	1FJG	0.2725	1	Major groove platform (H)	A	SSU rRNA	C	747	C	749	*	G	657	G	658	cWW	cWW
6	IL_1G1X_002	1G1X	0.2725	1	Major groove platform	E+D	16S RIBOSOMAL RNA	C	747	C	749	*	G	657	G	658	cWW	cWW
7	IL_2ZJR_086	2ZJR	0.3626	1		X	LSU rRNA	U	2436	A	2438	*	U	2472	G	2473	ncWW	cWW
8	IL_2ZJR_098	2ZJR	0.3510	3	Multiple bulged bases (H)	X	LSU rRNA	C	2674	U	2675	*	A	2690	G	2694	cWW	cWW
9	IL_3F1H_075	3F1H	0.4332	1		A	23S RRNA	C	2050	G	2052	*	C	2617	G	2618	cWW	cWW
10	IL_3F1H_089	3F1H	0.4869	1		A	23S RRNA	C	2496	C	2498	*	G	2454	G	2455	cWW	cWW
11	IL_3F1H_090	3F1H	0.4846	1		A	23S RRNA	U	2457	A	2459	*	U	2493	G	2494	cWW	cWW
12	IL_3NKB_002	3NKB	0.5383	1	Major groove platform	B	The hepatitis delta virus ribozyme	G	55	A	57	*	U	47	C	48	cWW	cWW
13	IL_3F1H_108	3F1H	0.5507	1		B	5S RRNA	C	65	G	67	*	C	17	G	18	cWW	cWW
14	IL_3OWZ_007	3OWZ	0.5698	1		B	Domain II of glycine riboswitch	C	68	C	70	*	G	35	G	36	cWW	cWW
15	IL_3F1H_008	3F1H	0.5258	1		A	23S RRNA	U	363\|\|\|F	C	364	*	G	273\|\|\|A	G	273\|\|\|B	cWW	cWW
16	IL_2ZJR_074	2ZJR	0.4445	1	Major groove platform (H)	X	LSU rRNA	C	2033	G	2035	*	C	2596	G	2597	cWW	cWW
17	IL_3F1H_103	3F1H	0.4987	3		A	23S RRNA	C	2695	U	2696	*	A	2711	G	2714	cWW	cWW
18	IL_2ZJR_089	2ZJR	0.4165	1		X	LSU rRNA	U	2559	G	2561	*	C	2486	G	2487	cWW	ncWW
19	IL_3OWZ_003	3OWZ	0.4558	1		A	Domain II of glycine riboswitch	C	68	C	70	*	G	35	G	36	cWW	cWW
20	IL_1S03_008	1S03	0.3263	1	Major groove platform	B	47-MER	C	34	A	36	*	U	16	G	17	cWW	cWW
21	IL_1QA6_004	1QA6	0.3163	2		D	58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN	G	137	A	140	*	U	151	C	152	cWW	cWW
22	IL_1I6U_003	1I6U	0.2019	1		D	16S RRNA FRAGMENT	U	9	A	11	*	U	28	G	29	cWW	cWW
23	IL_1QA6_002	1QA6	0.2598	2		C	58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN	G	137	A	140	*	U	151	C	152	cWW	cWW
24	IL_1I6U_001	1I6U	0.2518	1	Major groove platform	C	16S RRNA FRAGMENT	U	9	A	11	*	U	28	G	29	cWW	cWW
25	IL_1XJR_002	1XJR	0.3040	1	Major groove platform	A	s2m RNA	U	37	C	39	*	G	13	G	14	cWW	cWW
26	IL_1S03_004	1S03	0.2546	1	Major groove platform	A	47-MER	C	34	A	36	*	U	16	G	17	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UAC*GG	2
CCC*GG	2
UGA*UG	2
CAG*CG	2
CUC*GG	2
CAA*UG	2
GAAA*UC	2
UAA*UG	2
CAC*GG	1
GGC*GC	1
UAC*GA	1
CU*ACAUG	1
GG*CAC	1
GUA*UC	1
CG*CAG	1
GG*UAC	1
CU*AUAAG	1
UGG*CG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	10
G*	4
*A	3
U*	3
C*	2
AA*	2
*CAU	1
*UAA	1

Release history

Release	0.4
Date	2011-12-08
Status	Updated, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_45564.3	Only in the parent motif
IL_45564.2 Compare	IL_1FJG_028, IL_1FJG_024, IL_3F1H_089, IL_1S72_080, IL_3NKB_002, IL_1G1X_002, IL_3F1H_075, IL_2ZJR_083, IL_2ZJR_085, IL_2ZJR_086, IL_2ZJR_089, IL_1XJR_002, IL_3F1H_090, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_3F1H_008, IL_1QA6_002, IL_1S03_004, IL_1S03_008, IL_3F1H_108, IL_3OWZ_007, IL_3OWZ_003, IL_2ZJR_074	IL_2ZJR_098, IL_3F1H_103
IL_43856.1 Compare	IL_2ZJR_098, IL_3F1H_103	IL_1FJG_028, IL_1FJG_024, IL_3F1H_089, IL_1S72_080, IL_3NKB_002, IL_1G1X_002, IL_3F1H_075, IL_2ZJR_083, IL_2ZJR_085, IL_2ZJR_086, IL_2ZJR_089, IL_1XJR_002, IL_3F1H_090, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_3F1H_008, IL_1QA6_002, IL_1S03_004, IL_1S03_008, IL_2ZJR_074, IL_3OWZ_007, IL_3OWZ_003, IL_3F1H_108	IL_2NOK_006, IL_2BQ5_001, IL_1I9X_001, IL_2NOK_003, IL_1I9X_002, IL_2BU1_002, IL_2BU1_001, IL_1FJG_001, IL_1S72_077, IL_397D_001, IL_1FJG_043, IL_2C50_002, IL_2C50_001, IL_2PLY_002, IL_2PLY_001, IL_1S72_040, IL_2VPL_005, IL_3D0U_001, IL_1S72_022, IL_2OZB_001, IL_3F1H_077, IL_2IZN_002, IL_2IZN_001, IL_2IZM_001, IL_2IZM_002, IL_2IPY_001, IL_1DQH_001, IL_2IPY_004, IL_1S03_006, IL_1FJG_036, IL_1S72_093, IL_1JZV_005, IL_3G78_015, IL_2C4Z_001, IL_3DIR_001, IL_1S72_074, IL_3F1H_098, IL_1GID_002, IL_3F1H_034, IL_1S03_002, IL_1S03_001, IL_1S72_104, IL_1S03_005, IL_1R3E_001, IL_1R3E_002, IL_2ZJR_091, IL_6MSF_001, IL_2ZJR_076, IL_2IZ9_001, IL_2IZ9_002, IL_2C4Z_002

Children motifs

Child motif	Common motif instances	Only in IL_45564.3	Only in the child motif
IL_91075.1 Compare	IL_1XJR_002, IL_2ZJR_083, IL_1FJG_028, IL_1G1X_002, IL_3OWZ_007, IL_3OWZ_003, IL_1I6U_003, IL_1S72_080, IL_2ZJR_085, IL_2ZJR_086, IL_2ZJR_074	IL_1I6U_001, IL_1QA6_004, IL_3F1H_008, IL_1QA6_002, IL_3F1H_090, IL_2ZJR_098, IL_1FJG_024, IL_1S03_004, IL_3F1H_089, IL_3F1H_075, IL_3F1H_103, IL_2ZJR_089, IL_3NKB_002, IL_1S03_008, IL_3F1H_108	IL_2QBG_091, IL_2QBG_025, IL_2QBG_044, IL_3PYO_081, IL_3PYO_080, IL_3O58_125, IL_3D0U_004, IL_3PYO_070, IL_2XZM_079, IL_3O30_045, IL_3P49_007, IL_2AW7_031, IL_3P49_010, IL_2XZM_055, IL_3Q1Q_001, IL_2QBG_001
IL_95965.1 Compare	IL_1S03_008, IL_1I6U_001, IL_1QA6_004, IL_1QA6_002, IL_1S03_004	IL_1XJR_002, IL_2ZJR_098, IL_3F1H_008, IL_2ZJR_083, IL_1FJG_028, IL_3F1H_090, IL_1G1X_002, IL_1FJG_024, IL_3F1H_089, IL_3OWZ_007, IL_3F1H_075, IL_3OWZ_003, IL_1I6U_003, IL_1S72_080, IL_2ZJR_085, IL_2ZJR_086, IL_2ZJR_074, IL_2ZJR_089, IL_3NKB_002, IL_3F1H_103, IL_3F1H_108	IL_1G1X_001, IL_2QBG_078, IL_2QBG_064
IL_01628.1 Compare	IL_1FJG_024	IL_1FJG_028, IL_3F1H_089, IL_1S72_080, IL_3NKB_002, IL_1G1X_002, IL_3F1H_075, IL_2ZJR_083, IL_2ZJR_085, IL_2ZJR_086, IL_2ZJR_089, IL_1XJR_002, IL_3F1H_103, IL_3F1H_090, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_3F1H_008, IL_1QA6_002, IL_1S03_004, IL_1S03_008, IL_2ZJR_074, IL_3OWZ_007, IL_3OWZ_003, IL_2ZJR_098, IL_3F1H_108	IL_1F7Y_001, IL_1FJG_027
IL_14562.1 Compare	IL_2ZJR_098	IL_1FJG_028, IL_1FJG_024, IL_3F1H_089, IL_1S72_080, IL_3NKB_002, IL_1G1X_002, IL_3F1H_075, IL_2ZJR_083, IL_2ZJR_085, IL_2ZJR_086, IL_2ZJR_089, IL_1XJR_002, IL_3F1H_103, IL_3F1H_090, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_3F1H_008, IL_1QA6_002, IL_1S03_004, IL_1S03_008, IL_2ZJR_074, IL_3OWZ_007, IL_3OWZ_003, IL_3F1H_108	IL_3PYO_093
IL_48662.1 Compare	IL_3NKB_002	IL_1FJG_028, IL_1FJG_024, IL_3F1H_089, IL_1S72_080, IL_1G1X_002, IL_3F1H_075, IL_2ZJR_083, IL_2ZJR_085, IL_2ZJR_086, IL_2ZJR_089, IL_1XJR_002, IL_3F1H_103, IL_3F1H_090, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_3F1H_008, IL_1QA6_002, IL_1S03_004, IL_1S03_008, IL_2ZJR_074, IL_3OWZ_007, IL_3OWZ_003, IL_2ZJR_098, IL_3F1H_108
IL_60288.1 Compare	IL_2ZJR_089	IL_1FJG_028, IL_1FJG_024, IL_3F1H_089, IL_1S72_080, IL_3NKB_002, IL_1G1X_002, IL_3F1H_075, IL_2ZJR_083, IL_2ZJR_085, IL_2ZJR_086, IL_1XJR_002, IL_3F1H_103, IL_3F1H_090, IL_1I6U_001, IL_1I6U_003, IL_1QA6_004, IL_3F1H_008, IL_1QA6_002, IL_1S03_004, IL_1S03_008, IL_2ZJR_074, IL_3OWZ_007, IL_3OWZ_003, IL_2ZJR_098, IL_3F1H_108	IL_2QBG_092, IL_2QBG_095, IL_3PYO_098, IL_3O58_131, IL_3O58_127, IL_3O58_103, IL_3O58_150

Motif IL_45564.3 Version IL_45564.3 of this group appears in releases 0.4 to 0.4 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_45564.3 Version IL_45564.3 of this group appears in releases 0.4 to 0.4

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