Motif IL_45794.1 Version IL_45794.1 of this group appears in releases 0.6 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-4 | 1-11 | 2-9 | 3-8 | 4-7 | 5-6 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_090 | 3U5H | 0.0000 | 3 | 5 | 25S rRNA | C | 2156 | G | 2157 | A | 2158 | G | 2160 | G | 2161 | * | U | 2173 | G | 2174 | U | 2176 | G | 2177 | A | 2178 | G | 2180 | cWW | tSS | tWW | tWW | cWW | ||
| 2 | IL_4A1B_085 | 4A1B | 0.1357 | 3 | 1 | 26S RRNA | U | 2152 | G | 2153 | A | 2154 | G | 2156 | G | 2157 | * | U | 2168 | G | 2169 | U | 2171 | G | 2172 | A | 2173 | A | 2175 | ncSs | cWW | tSS | tWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAUGG*UGUUGACG | 1 |
| UGACGG*UGAUGACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUG*GUUGAC | 1 |
| GACG*GAUGAC | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_45794.1 | Only in the child motif |
|---|---|---|---|
| IL_45794.2 Compare | IL_4A1B_085, IL_3U5H_090 | IL_4CUV_090 |
- Annotations
- Basepair signature
- cWW-L-R-R-tWW-tWW-cWW
- Heat map statistics
- Min 0.14 | Avg 0.07 | Max 0.14
Coloring options: