Motif IL_45944.3 Version IL_45944.3 of this group appears in releases 3.77 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 1-11 | 4-8 | 9-10 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1MZP_002 | 1MZP | 0.4742 | 2 | B | fragment of 23S rRNA | G | 6 | G | 8 | U | 9 | A | 10 | G | 11 | G | 12 | A | 13 | A | 15 | G | 16 | * | C | 49 | C | 50 | cWW | tWH | |
2 | IL_5ML7_006 | 5ML7 | 0.4342 | 2 | B | 23S ribosomal RNA | G | 2151 | G | 2153 | C | 2154 | A | 2155 | G | 2156 | C | 2157 | A | 2158 | A | 2160 | G | 2161 | * | C | 2223 | C | 2224 | cWW | tWH | cWW |
3 | IL_3U4M_002 | 3U4M | 0.4122 | 2 | B | LSU rRNA | G | 2110 | G | 2112 | U | 2113 | A | 2114 | G | 2115 | G | 2116 | A | 2117 | A | 2119 | G | 2120 | * | C | 2178 | C | 2179 | cWW | tWH | cWW |
4 | IL_4JRC_004 | 4JRC | 0.0000 | 1 | B | Distal Stem I region of the glyQS T box leader RNA | C | 37 | G | 39 | A | 40 | A | 41 | G | 42 | C | 43 | G | 44 | A | 45 | G | 46 | * | U | 68 | G | 69 | cWW | tWH | cWW |
5 | IL_4MGN_002 | 4MGN | 0.1632 | 1 | A | glyQS T box riboswitch | C | 37 | G | 39 | A | 40 | A | 41 | G | 42 | C | 43 | G | 44 | A | 45 | G | 46 | * | U | 68 | G | 69 | cWW | ntWH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GCGUAGGAUAG*CC | 2 |
CCGAAGCGAG*UG | 2 |
GUGCAGCAUAG*CC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CGUAGGAUA* | 2 |
CGAAGCGA* | 2 |
UGCAGCAUA* | 1 |
Release history
Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-L-cWW-L-tWH-L-R-L
- Heat map statistics
- Min 0.16 | Avg 0.41 | Max 0.99
Coloring options: