Motif IL_47499.1 Version IL_47499.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-3 | 2-5 | 2-6 | 3-6 | 3-7 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5TBW_105 | 5TBW | 0.2796 | 1 | 1 | LSU rRNA | U | 2858 | U | 2859 | U | 2861 | U | 2862 | * | G | 2828 | U | 2829 | G | 2830 | cWW | ncWH | cWw | cWW | ||||
2 | IL_8C3A_113 | 8C3A | 0.2547 | 1 | 1 | LSU rRNA | U | 2830 | U | 2831 | U | 2833 | U | 2834 | * | G | 2800 | U | 2801 | G | 2802 | cWW | ncWH | cWw | cWW | ||||
3 | IL_5J7L_337 | 5J7L | 0.1223 | 1 | Major groove minor groove platform with extra cWW | DA | LSU rRNA | U | 2489 | G | 2490 | U | 2492 | U | 2493 | * | A | 2459 | U | 2460 | A | 2461 | cWW | cSH | cWw | cWW | |||
4 | IL_8VTW_093 | 8VTW | 0.0000 | 1 | Major groove minor groove platform with extra cWW (H) | 1A | LSU rRNA | G | 2489 | G | 2490 | U | 2492 | U | 2493 | * | A | 2459 | U | 2460 | C | 2461 | cWW | cSH | cWw | cWW | |||
5 | IL_4WF9_092 | 4WF9 | 0.0900 | 1 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 2516 | G | 2517 | U | 2519 | U | 2520 | * | A | 2486 | U | 2487 | C | 2488 | cWW | cSH | cWw | cWW | |||
6 | IL_7A0S_086 | 7A0S | 0.0962 | 1 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 2468 | G | 2469 | U | 2471 | U | 2472 | * | A | 2438 | U | 2439 | C | 2440 | cWW | cSH | ncWB | cWw | cWW | ||
7 | IL_4V9F_084 | 4V9F | 0.1721 | 1 | Major groove minor groove platform with extra cWW | 0 | LSU rRNA | G | 2524 | G | 2525 | U | 2527 | U | 2528 | * | G | 2494 | U | 2495 | C | 2496 | cWW | cSH | cWw | cWW | |||
8 | IL_2OEU_001 | 2OEU | 0.5146 | 1 | B+A | RNA (20-mer) | C | 14 | C | 15 | A | 17 | U | 18 | * | A | 3 | U | 4 | G | 5 | cWW | cWW | cWW | |||||
9 | IL_4WF9_012 | 4WF9 | 0.5309 | 1 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 409 | G | 410 | U | 412 | C | 413 | * | G | 304 | A | 305 | C | 306 | cWW | ncWB | ncWW | ||||
10 | IL_4GXY_009 | 4GXY | 0.7078 | 1 | Major groove minor groove platform with extra cWW | A | Adenosylcobalamin riboswitch | G | 122 | G | 123 | A | 124 | G | 126 | * | C | 105 | A | 106 | C | 107 | cWW | ntSH | ntHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGUUU*AUC | 3 |
UUUUU*GUG | 2 |
UGUUU*AUA | 1 |
GGCUU*GUC | 1 |
CCAAU*AUG | 1 |
GGAUC*GAC | 1 |
GGAAG*CAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUU*U | 4 |
UUU*U | 2 |
GCU*U | 1 |
CAA*U | 1 |
GAU*A | 1 |
GAA*A | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove minor groove platform with extra cWW (6)
- (3)
- Major groove minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.42 | Max 0.99
Coloring options: