RNA 3D Hub //

Motif IL_47499.1 Version IL_47499.1 of this group appears in releases 3.88 to 3.88

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-32-52-63-63-74-5
1 IL_5TBW_1055TBW0.27961Major groove minor groove platform with extra cWW1 LSU rRNAU2858U2859U2861U2862*G2828U2829G2830cWWncWHcWwcWW
2 IL_8C3A_1138C3A0.25471Major groove minor groove platform with extra cWW1 LSU rRNAU2830U2831U2833U2834*G2800U2801G2802cWWncWHcWwcWW
3 IL_5J7L_3375J7L0.12231Major groove minor groove platform with extra cWWDA LSU rRNAU2489G2490U2492U2493*A2459U2460A2461cWWcSHcWwcWW
4 IL_8VTW_0938VTW0.00001Major groove minor groove platform with extra cWW1A LSU rRNAG2489G2490U2492U2493*A2459U2460C2461cWWcSHcWwcWW
5 IL_4WF9_0924WF90.09001Major groove minor groove platform with extra cWWX LSU rRNAG2516G2517U2519U2520*A2486U2487C2488cWWcSHcWwcWW
6 IL_7A0S_0867A0S0.09621Major groove minor groove platform with extra cWWX LSU rRNAG2468G2469U2471U2472*A2438U2439C2440cWWcSHncWBcWwcWW
7 IL_4V9F_0844V9F0.17211Major groove minor groove platform with extra cWW0 LSU rRNAG2524G2525U2527U2528*G2494U2495C2496cWWcSHcWwcWW
8 IL_2OEU_0012OEU0.51461B+ARNA (20-mer)C14C15A17U18*A3U4G5cWWcWWcWW
9 IL_4WF9_0124WF90.53091Major groove minor groove platform with extra cWWX LSU rRNAG409G410U412C413*G304A305C306cWWncWBncWW
10 IL_4GXY_0094GXY0.70781Major groove minor groove platform with extra cWWAAdenosylcobalamin riboswitchG122G123A124G126*C105A106C107cWWntSHntHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUUU*AUC3
UUUUU*GUG2
UGUUU*AUA1
GGCUU*GUC1
CCAAU*AUG1
GGAUC*GAC1
GGAAG*CAC1
Non-Watson-Crick part of the motif
SequenceCounts
GUU*U4
UUU*U2
GCU*U1
CAA*U1
GAU*A1
GAA*A1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove minor groove platform with extra cWW (9)
  • (1)
    • Basepair signature
    cWW-L-cWW-cWW
    Heat map statistics
    Min 0.09 | Avg 0.42 | Max 0.99
    Help

    Coloring options:

    IL_5TBW_105:IL_5TBW_105 = 0IL_5TBW_105:IL_8C3A_113 = 0.1082IL_5TBW_105:IL_5J7L_337 = 0.2939IL_5TBW_105:IL_8VTW_093 = 0.2796IL_5TBW_105:IL_4WF9_092 = 0.4372IL_5TBW_105:IL_7A0S_086 = 0.4599IL_5TBW_105:IL_4V9F_084 = 0.4427IL_5TBW_105:IL_2OEU_001 = 0.6169IL_5TBW_105:IL_4WF9_012 = 0.7779IL_5TBW_105:IL_4GXY_009 = 0.9872IL_8C3A_113:IL_5TBW_105 = 0.1082IL_8C3A_113:IL_8C3A_113 = 0IL_8C3A_113:IL_5J7L_337 = 0.2763IL_8C3A_113:IL_8VTW_093 = 0.2547IL_8C3A_113:IL_4WF9_092 = 0.3314IL_8C3A_113:IL_7A0S_086 = 0.3482IL_8C3A_113:IL_4V9F_084 = 0.3074IL_8C3A_113:IL_2OEU_001 = 0.5624IL_8C3A_113:IL_4WF9_012 = 0.731IL_8C3A_113:IL_4GXY_009 = 0.8862IL_5J7L_337:IL_5TBW_105 = 0.2939IL_5J7L_337:IL_8C3A_113 = 0.2763IL_5J7L_337:IL_5J7L_337 = 0IL_5J7L_337:IL_8VTW_093 = 0.1223IL_5J7L_337:IL_4WF9_092 = 0.3297IL_5J7L_337:IL_7A0S_086 = 0.2968IL_5J7L_337:IL_4V9F_084 = 0.309IL_5J7L_337:IL_2OEU_001 = 0.5793IL_5J7L_337:IL_4WF9_012 = 0.6156IL_5J7L_337:IL_4GXY_009 = 0.7456IL_8VTW_093:IL_5TBW_105 = 0.2796IL_8VTW_093:IL_8C3A_113 = 0.2547IL_8VTW_093:IL_5J7L_337 = 0.1223IL_8VTW_093:IL_8VTW_093 = 0IL_8VTW_093:IL_4WF9_092 = 0.09IL_8VTW_093:IL_7A0S_086 = 0.0962IL_8VTW_093:IL_4V9F_084 = 0.1721IL_8VTW_093:IL_2OEU_001 = 0.5146IL_8VTW_093:IL_4WF9_012 = 0.5309IL_8VTW_093:IL_4GXY_009 = 0.7078IL_4WF9_092:IL_5TBW_105 = 0.4372IL_4WF9_092:IL_8C3A_113 = 0.3314IL_4WF9_092:IL_5J7L_337 = 0.3297IL_4WF9_092:IL_8VTW_093 = 0.09IL_4WF9_092:IL_4WF9_092 = 0IL_4WF9_092:IL_7A0S_086 = 0.0938IL_4WF9_092:IL_4V9F_084 = 0.192IL_4WF9_092:IL_2OEU_001 = 0.542IL_4WF9_092:IL_4WF9_012 = 0.5768IL_4WF9_092:IL_4GXY_009 = 0.7555IL_7A0S_086:IL_5TBW_105 = 0.4599IL_7A0S_086:IL_8C3A_113 = 0.3482IL_7A0S_086:IL_5J7L_337 = 0.2968IL_7A0S_086:IL_8VTW_093 = 0.0962IL_7A0S_086:IL_4WF9_092 = 0.0938IL_7A0S_086:IL_7A0S_086 = 0IL_7A0S_086:IL_4V9F_084 = 0.1978IL_7A0S_086:IL_2OEU_001 = 0.5368IL_7A0S_086:IL_4WF9_012 = 0.5795IL_7A0S_086:IL_4GXY_009 = 0.7562IL_4V9F_084:IL_5TBW_105 = 0.4427IL_4V9F_084:IL_8C3A_113 = 0.3074IL_4V9F_084:IL_5J7L_337 = 0.309IL_4V9F_084:IL_8VTW_093 = 0.1721IL_4V9F_084:IL_4WF9_092 = 0.192IL_4V9F_084:IL_7A0S_086 = 0.1978IL_4V9F_084:IL_4V9F_084 = 0IL_4V9F_084:IL_2OEU_001 = 0.5592IL_4V9F_084:IL_4WF9_012 = 0.6031IL_4V9F_084:IL_4GXY_009 = 0.7685IL_2OEU_001:IL_5TBW_105 = 0.6169IL_2OEU_001:IL_8C3A_113 = 0.5624IL_2OEU_001:IL_5J7L_337 = 0.5793IL_2OEU_001:IL_8VTW_093 = 0.5146IL_2OEU_001:IL_4WF9_092 = 0.542IL_2OEU_001:IL_7A0S_086 = 0.5368IL_2OEU_001:IL_4V9F_084 = 0.5592IL_2OEU_001:IL_2OEU_001 = 0IL_2OEU_001:IL_4WF9_012 = 0.4508IL_2OEU_001:IL_4GXY_009 = 0.594IL_4WF9_012:IL_5TBW_105 = 0.7779IL_4WF9_012:IL_8C3A_113 = 0.731IL_4WF9_012:IL_5J7L_337 = 0.6156IL_4WF9_012:IL_8VTW_093 = 0.5309IL_4WF9_012:IL_4WF9_092 = 0.5768IL_4WF9_012:IL_7A0S_086 = 0.5795IL_4WF9_012:IL_4V9F_084 = 0.6031IL_4WF9_012:IL_2OEU_001 = 0.4508IL_4WF9_012:IL_4WF9_012 = 0IL_4WF9_012:IL_4GXY_009 = 0.4399IL_4GXY_009:IL_5TBW_105 = 0.9872IL_4GXY_009:IL_8C3A_113 = 0.8862IL_4GXY_009:IL_5J7L_337 = 0.7456IL_4GXY_009:IL_8VTW_093 = 0.7078IL_4GXY_009:IL_4WF9_092 = 0.7555IL_4GXY_009:IL_7A0S_086 = 0.7562IL_4GXY_009:IL_4V9F_084 = 0.7685IL_4GXY_009:IL_2OEU_001 = 0.594IL_4GXY_009:IL_4WF9_012 = 0.4399IL_4GXY_009:IL_4GXY_009 = 0IL_5TBW_105IL_8C3A_113IL_5J7L_337IL_8VTW_093IL_4WF9_092IL_7A0S_086IL_4V9F_084IL_2OEU_001IL_4WF9_012IL_4GXY_009Discrepancy0.000.200.400.600.80
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