#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-32-52-63-63-74-5
1 IL_5TBW_1055TBW0.279611 LSU rRNAU2858U2859U2861U2862*G2828U2829G2830cWWncWHcWwcWW
2 IL_8C3A_1138C3A0.254711 LSU rRNAU2830U2831U2833U2834*G2800U2801G2802cWWncWHcWwcWW
3 IL_5J7L_3375J7L0.12231Major groove minor groove platform with extra cWWDA LSU rRNAU2489G2490U2492U2493*A2459U2460A2461cWWcSHcWwcWW
4 IL_8VTW_0938VTW0.00001Major groove minor groove platform with extra cWW (H)1A LSU rRNAG2489G2490U2492U2493*A2459U2460C2461cWWcSHcWwcWW
5 IL_4WF9_0924WF90.09001Major groove minor groove platform with extra cWWX LSU rRNAG2516G2517U2519U2520*A2486U2487C2488cWWcSHcWwcWW
6 IL_7A0S_0867A0S0.09621Major groove minor groove platform with extra cWWX LSU rRNAG2468G2469U2471U2472*A2438U2439C2440cWWcSHncWBcWwcWW
7 IL_4V9F_0844V9F0.17211Major groove minor groove platform with extra cWW0 LSU rRNAG2524G2525U2527U2528*G2494U2495C2496cWWcSHcWwcWW
8 IL_2OEU_0012OEU0.51461B+ARNA (20-mer)C14C15A17U18*A3U4G5cWWcWWcWW
9 IL_4WF9_0124WF90.53091Major groove minor groove platform with extra cWWX LSU rRNAG409G410U412C413*G304A305C306cWWncWBncWW
10 IL_4GXY_0094GXY0.70781Major groove minor groove platform with extra cWWAAdenosylcobalamin riboswitchG122G123A124G126*C105A106C107cWWntSHntHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUUU*AUC3
UUUUU*GUG2
UGUUU*AUA1
GGCUU*GUC1
CCAAU*AUG1
GGAUC*GAC1
GGAAG*CAC1
Non-Watson-Crick part of the motif
SequenceCounts
GUU*U4
UUU*U2
GCU*U1
CAA*U1
GAU*A1
GAA*A1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove minor groove platform with extra cWW (6)
  • (3)
  • Major groove minor groove platform with extra cWW (H) (1)
  • Basepair signature
    cWW-L-cWW-cWW
    Heat map statistics
    Min 0.09 | Avg 0.42 | Max 0.99
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