#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_4BPP_0844BPP0.98680A18S RRNAG1621U1622A1623G1624*C1701A1702A1703C1704cWWntSHntHScWW
2 IL_1S72_0371S720.743500 LSU rRNAA965U966U967G968*C1000U1001G1002U1003cWWcSWcWwcWW
3 IL_1DUQ_0011DUQ0.00001B+ATHE REV BINDING ELEMENTG123G124A126C127*G104G105G106C107cWWcHWcWWcWW
4 IL_1CSL_0011CSL0.04501B+ARNA (15-mer)G70G71A73C74*G46G47G48C49cWWcHWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUAC*GGGC2
GUAG*CAAC1
AUUG*CUGU1
Non-Watson-Crick part of the motif
SequenceCounts
GUA*GG2
UA*AA1
UU*UG1

Release history

Release1.51.61.71.81.91.101.111.121.131.14
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-27
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_47758.2Only in the parent motif
IL_47758.1
Compare
IL_1DUQ_001, IL_1CSL_001, IL_1S72_037IL_4BPP_084IL_2QBG_055

Children motifs

Child motifCommon motif instancesOnly in IL_47758.2Only in the child motif
IL_47758.3
Compare
IL_1DUQ_001, IL_1CSL_001, IL_1S72_037, IL_4BPP_084IL_4CUV_105
Annotations
  • (4)
  • Basepair signature
    cWW-cHW-cWW-cWW
    Heat map statistics
    Min 0.05 | Avg 0.51 | Max 0.99
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