Motif IL_47758.2 Version IL_47758.2 of this group appears in releases 1.5 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4BPP_084 | 4BPP | 0.9868 | 0 | A | 18S RRNA | G | 1621 | U | 1622 | A | 1623 | G | 1624 | * | C | 1701 | A | 1702 | A | 1703 | C | 1704 | cWW | ntSH | ntHS | cWW |
2 | IL_1S72_037 | 1S72 | 0.7435 | 0 | 0 | LSU rRNA | A | 965 | U | 966 | U | 967 | G | 968 | * | C | 1000 | U | 1001 | G | 1002 | U | 1003 | cWW | cSW | cWw | cWW |
3 | IL_1DUQ_001 | 1DUQ | 0.0000 | 1 | B+A | THE REV BINDING ELEMENT | G | 123 | G | 124 | A | 126 | C | 127 | * | G | 104 | G | 105 | G | 106 | C | 107 | cWW | cHW | cWW | cWW |
4 | IL_1CSL_001 | 1CSL | 0.0450 | 1 | B+A | RNA (15-mer) | G | 70 | G | 71 | A | 73 | C | 74 | * | G | 46 | G | 47 | G | 48 | C | 49 | cWW | cHW | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGUAC*GGGC | 2 |
GUAG*CAAC | 1 |
AUUG*CUGU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUA*GG | 2 |
UA*AA | 1 |
UU*UG | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_47758.2 | Only in the parent motif |
---|---|---|---|
IL_47758.1 Compare | IL_1DUQ_001, IL_1CSL_001, IL_1S72_037 | IL_4BPP_084 | IL_2QBG_055 |
Children motifs
Child motif | Common motif instances | Only in IL_47758.2 | Only in the child motif |
---|---|---|---|
IL_47758.3 Compare | IL_1DUQ_001, IL_1CSL_001, IL_1S72_037, IL_4BPP_084 | IL_4CUV_105 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cHW-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.51 | Max 0.99
Coloring options: