#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_1S72_0371S720.74350 0 LSU rRNAA965U966U967G968*C1000U1001G1002U1003cWWcSWcWwcWW
2 IL_1CSL_0011CSL0.04501 B+ARNA (15-mer)G70G71A73C74*G46G47G48C49cWWcHWcWWcWW
3 IL_1DUQ_0011DUQ0.00001 B+ATHE REV BINDING ELEMENTG123G124A126C127*G104G105G106C107cWWcHWcWWcWW
4 IL_2QBG_0552QBG0.57681 B23S rRNAC1557C1558G1560C1561*G1432A1433A1434G1435cWWncWBcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUAC*GGGC2
AUUG*CUGU1
CCUGC*GAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GUA*GG2
UU*UG1
CUG*AA1

Release history

Release0.70.80.90.100.110.121.01.11.21.31.4
Date2013-02-172013-02-172013-02-172013-02-172013-02-172013-02-172013-03-042013-04-082013-05-042013-06-012013-07-01
Status> 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_47758.1Only in the parent motif
IL_76831.1
Compare
IL_1DUQ_001, IL_1CSL_001IL_2QBG_055, IL_1S72_037IL_1QBP_008, IL_1DUQ_003, IL_1DUQ_005, IL_1DUQ_007, IL_3GX5_004, IL_3NPB_007
IL_41766.1
Compare
IL_2QBG_055IL_1DUQ_001, IL_1CSL_001, IL_1S72_037IL_2NOK_007, IL_2NOK_004, IL_2PN4_009, IL_2PN4_004, IL_3R2D_002, IL_3U5F_049, IL_3U5F_048, IL_280D_002, IL_3U5F_083, IL_280D_001, IL_2AW7_036, IL_3U5F_046, IL_3U5H_043, IL_2QBG_041, IL_3U5F_008, IL_1G1X_003, IL_1JID_002, IL_1FJG_029, IL_1F7Y_003, IL_2XZM_091, IL_3U5F_047, IL_2A64_004, IL_1D4R_001, IL_1D4R_003, IL_2ZJR_040, IL_1UN6_003, IL_3U5F_090, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_3U5H_135, IL_3U5H_134, IL_4A1B_127, IL_1MFQ_004, IL_4A1B_103, IL_4A1B_047, IL_1S72_018, IL_3U5H_106, IL_2XZM_002, IL_1S72_012, IL_3U5F_078, IL_2XZM_008, IL_1GID_001, IL_3U5F_055, IL_2XZM_088, IL_2XZM_052, IL_422D_001
IL_57785.4
Compare
IL_1S72_037IL_1DUQ_001, IL_2QBG_055, IL_1CSL_001IL_2FQN_003, IL_2OE5_002

Children motifs

Child motifCommon motif instancesOnly in IL_47758.1Only in the child motif
IL_47758.2
Compare
IL_1DUQ_001, IL_1CSL_001, IL_1S72_037IL_2QBG_055IL_4BPP_084
IL_41766.4
Compare
IL_2QBG_055IL_1DUQ_001, IL_1CSL_001, IL_1S72_037IL_2NOK_007, IL_2NOK_004, IL_1FJG_029, IL_4BPP_086, IL_4BPP_008, IL_2PN4_004, IL_3R2D_002, IL_3U5H_106, IL_3U5F_048, IL_3U5F_083, IL_280D_001, IL_3U5F_047, IL_3U5F_046, IL_3U5H_043, IL_2QBG_041, IL_3U5F_008, IL_1G1X_003, IL_1JID_002, IL_3TZR_003, IL_2AW7_036, IL_4BPP_051, IL_2A64_004, IL_1D4R_001, IL_3U5F_055, IL_1D4R_003, IL_4EYA_008, IL_4IOA_041, IL_3U5F_090, IL_402D_001, IL_1GID_008, IL_3U5H_135, IL_3U5H_134, IL_4A1B_127, IL_1MFQ_004, IL_4A1B_103, IL_4A1B_047, IL_1S72_018, IL_3U5F_049, IL_4BPP_089, IL_1S72_012, IL_3U5F_078, IL_1GID_001, IL_1F7Y_003, IL_4EYA_010, IL_4EYA_012, IL_4BPP_044, IL_4BPP_045, IL_4BPP_043
Annotations
Basepair signature
cWW-cHW-cWW-cWW
Heat map statistics
Min 0.05 | Avg 0.45 | Max 0.93
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