Motif IL_47758.1 Version IL_47758.1 of this group appears in releases 0.7 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_037 | 1S72 | 0.7435 | 0 | 0 | LSU rRNA | A | 965 | U | 966 | U | 967 | G | 968 | * | C | 1000 | U | 1001 | G | 1002 | U | 1003 | cWW | cSW | cWw | cWW | |
| 2 | IL_1CSL_001 | 1CSL | 0.0450 | 1 | B+A | RNA (15-mer) | G | 70 | G | 71 | A | 73 | C | 74 | * | G | 46 | G | 47 | G | 48 | C | 49 | cWW | cHW | cWW | cWW | |
| 3 | IL_1DUQ_001 | 1DUQ | 0.0000 | 1 | B+A | THE REV BINDING ELEMENT | G | 123 | G | 124 | A | 126 | C | 127 | * | G | 104 | G | 105 | G | 106 | C | 107 | cWW | cHW | cWW | cWW | |
| 4 | IL_2QBG_055 | 2QBG | 0.5768 | 1 | B | 23S rRNA | C | 1557 | C | 1558 | G | 1560 | C | 1561 | * | G | 1432 | A | 1433 | A | 1434 | G | 1435 | cWW | ncWB | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAC*GGGC | 2 |
| AUUG*CUGU | 1 |
| CCUGC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*GG | 2 |
| UU*UG | 1 |
| CUG*AA | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Children motifs
| Child motif | Common motif instances | Only in IL_47758.1 | Only in the child motif |
|---|---|---|---|
| IL_47758.2 Compare | IL_1DUQ_001, IL_1CSL_001, IL_1S72_037 | IL_2QBG_055 | IL_4BPP_084 |
| IL_41766.4 Compare | IL_2QBG_055 | IL_1DUQ_001, IL_1CSL_001, IL_1S72_037 | IL_2NOK_007, IL_2NOK_004, IL_1FJG_029, IL_4BPP_086, IL_4BPP_008, IL_2PN4_004, IL_3R2D_002, IL_3U5H_106, IL_3U5F_048, IL_3U5F_083, IL_280D_001, IL_3U5F_047, IL_3U5F_046, IL_3U5H_043, IL_2QBG_041, IL_3U5F_008, IL_1G1X_003, IL_1JID_002, IL_3TZR_003, IL_2AW7_036, IL_4BPP_051, IL_2A64_004, IL_1D4R_001, IL_3U5F_055, IL_1D4R_003, IL_4EYA_008, IL_4IOA_041, IL_3U5F_090, IL_402D_001, IL_1GID_008, IL_3U5H_135, IL_3U5H_134, IL_4A1B_127, IL_1MFQ_004, IL_4A1B_103, IL_4A1B_047, IL_1S72_018, IL_3U5F_049, IL_4BPP_089, IL_1S72_012, IL_3U5F_078, IL_1GID_001, IL_1F7Y_003, IL_4EYA_010, IL_4EYA_012, IL_4BPP_044, IL_4BPP_045, IL_4BPP_043 |
- Annotations
- Basepair signature
- cWW-cHW-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.45 | Max 0.93
Coloring options: