Motif IL_47758.3 Version IL_47758.3 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1CSL_001 | 1CSL | 0.0450 | 1 | B+A | RNA (15-mer) | G | 70 | G | 71 | A | 73 | C | 74 | * | G | 46 | G | 47 | G | 48 | C | 49 | cWW | cHW | cWW | cWW |
| 2 | IL_1DUQ_001 | 1DUQ | 0.0000 | 1 | B+A | THE REV BINDING ELEMENT | G | 123 | G | 124 | A | 126 | C | 127 | * | G | 104 | G | 105 | G | 106 | C | 107 | cWW | cHW | cWW | cWW |
| 3 | IL_4CUV_105 | 4CUV | 0.5502 | 9 | 1 | 25S RRNA | A | 2450 | U | 2451 | G | 2452 | G | 2462 | * | C | 2493 | C | 2494 | U | 2495 | U | 2496 | cWW | ncWW | cWW | |
| 4 | IL_1S72_037 | 1S72 | 0.7435 | 0 | 0 | LSU rRNA | A | 965 | U | 966 | U | 967 | G | 968 | * | C | 1000 | U | 1001 | G | 1002 | U | 1003 | cWW | cSW | cWw | cWW |
| 5 | IL_4BPP_084 | 4BPP | 0.9868 | 0 | A | 18S RRNA | G | 1621 | U | 1622 | A | 1623 | G | 1624 | * | C | 1701 | A | 1702 | A | 1703 | C | 1704 | cWW | ntSH | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAC*GGGC | 2 |
| AUGCGUAGGAUAG*CCUU | 1 |
| AUUG*CUGU | 1 |
| GUAG*CAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*GG | 2 |
| UGCGUAGGAUA*CU | 1 |
| UU*UG | 1 |
| UA*AA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_47758.3 | Only in the parent motif |
|---|---|---|---|
| IL_47758.2 Compare | IL_1DUQ_001, IL_1CSL_001, IL_1S72_037, IL_4BPP_084 | IL_4CUV_105 |
Children motifs
| Child motif | Common motif instances | Only in IL_47758.3 | Only in the child motif |
|---|---|---|---|
| IL_32902.1 Compare | IL_1DUQ_001, IL_1CSL_001 | IL_4CUV_105, IL_1S72_037, IL_4BPP_084 | IL_1VW3_042, IL_2QBG_046, IL_2QBG_055, IL_1VX6_076, IL_4CUX_062, IL_3J7A_044 |
| IL_67399.1 Compare | IL_1S72_037, IL_4BPP_084 | IL_1DUQ_001, IL_4CUV_105, IL_1CSL_001 | IL_1VX2_043, IL_1VWW_106, IL_3J7A_035, IL_2Y9B_002 |
| IL_72062.1 Compare | IL_4CUV_105 | IL_1DUQ_001, IL_1CSL_001, IL_1S72_037, IL_4BPP_084 | IL_2FQN_003, IL_2OE5_002, IL_4CUV_048, IL_1VX6_048 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cHW-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.53 | Max 0.99
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