Motif IL_48187.1 Version IL_48187.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_102 | 4A1B | 0.4625 | 2 | 1 | 26S RRNA | C | 2655 | A | 2656 | G | 2657 | * | C | 2675 | G | 2676 | G | 2679 | cWW | tHS | cWW | |
| 2 | IL_1S72_078 | 1S72 | 0.2160 | 2 | 0 | LSU rRNA | C | 2331 | A | 2332 | G | 2333 | * | C | 2351 | G | 2352 | G | 2355 | cWW | tHS | cWW | |
| 3 | IL_3U5H_104 | 3U5H | 0.1871 | 2 | 5 | 25S rRNA | C | 2666 | A | 2667 | U | 2668 | * | A | 2686 | G | 2687 | G | 2690 | cWW | tHS | cWW | |
| 4 | IL_2ZJR_081 | 2ZJR | 0.0000 | 2 | Isolated tHS basepair with bulges (H) | X | LSU rRNA | C | 2276 | A | 2277 | A | 2278 | * | U | 2296 | G | 2297 | G | 2300 | cWW | ntHS | cWW |
| 5 | IL_3UXR_012 | 3UXR | 0.1761 | 1 | A | 23S ribosomal RNA | C | 288 | A | 289 | G | 290 | * | U | 350 | G | 351 | G | 353 | cWW | tHS | cWW | |
| 6 | IL_3UXR_086 | 3UXR | 0.2332 | 2 | A | 23S ribosomal RNA | C | 2297 | A | 2298 | G | 2299 | * | C | 2317 | G | 2318 | G | 2321 | cWW | cWW | ||
| 7 | IL_2ZJR_078 | 2ZJR | 0.2558 | 1 | Isolated tHS basepair with bulges (H) | X | LSU rRNA | U | 2064 | A | 2065 | G | 2066 | * | C | 2215 | G | 2216 | G | 2218 | cWW | ntHS | cWW |
| 8 | IL_2QBG_082 | 2QBG | 0.3290 | 1 | B | 23S rRNA | U | 2081 | A | 2082 | G | 2083 | * | U | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW | |
| 9 | IL_3U5H_100 | 3U5H | 0.3826 | 1 | 5 | 25S rRNA | U | 2423 | A | 2424 | G | 2425 | * | U | 2604 | G | 2605 | G | 2607 | cWW | tHS | cWW | |
| 10 | IL_3UXR_079 | 3UXR | 0.4078 | 1 | A | 23S ribosomal RNA | C | 2081 | A | 2082 | G | 2083 | * | C | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW | |
| 11 | IL_1S72_076 | 1S72 | 0.3980 | 1 | Isolated tHS basepair with bulges (H) | 0 | LSU rRNA | C | 2122 | A | 2123 | G | 2124 | * | C | 2269 | G | 2270 | G | 2272 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAG*UGGG | 2 |
| CAG*CGGG | 2 |
| CAG*CGUAG | 1 |
| CAG*CGAAG | 1 |
| CAU*AGUAG | 1 |
| CAA*UGUAG | 1 |
| CAG*UGGG | 1 |
| CAG*CGGAG | 1 |
| UAG*CGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GG | 6 |
| A*GUA | 3 |
| A*GAA | 1 |
| A*GGA | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_48187.1 | Only in the parent motif |
|---|---|---|---|
| IL_47067.1 Compare | IL_1S72_076, IL_2ZJR_081, IL_2QBG_082, IL_1S72_078, IL_2ZJR_078 | IL_3UXR_012, IL_3U5H_104, IL_3U5H_100, IL_3UXR_086, IL_3UXR_079, IL_4A1B_102 | IL_3O58_116, IL_3PYO_074, IL_3PYO_076, IL_3PYO_011 |
Children motifs
| Child motif | Common motif instances | Only in IL_48187.1 | Only in the child motif |
|---|---|---|---|
| IL_21304.1 Compare | IL_1S72_076, IL_2ZJR_078, IL_2QBG_082, IL_3U5H_100 | IL_3UXR_012, IL_2ZJR_081, IL_3U5H_104, IL_1S72_078, IL_3UXR_086, IL_3UXR_079, IL_4A1B_102 | IL_2XZM_006, IL_3V2F_079, IL_3U5F_006, IL_3U5H_085, IL_3V2F_012, IL_1S72_062, IL_4A1B_081 |
| IL_10007.1 Compare | IL_1S72_078, IL_4A1B_102 | IL_3UXR_012, IL_2QBG_082, IL_2ZJR_078, IL_2ZJR_081, IL_3U5H_104, IL_3U5H_100, IL_1S72_076, IL_3UXR_079, IL_3UXR_086 | IL_3V7E_007, IL_2QBG_087, IL_3GX5_003, IL_4AOB_003 |
| IL_53774.1 Compare | IL_2ZJR_081, IL_3U5H_104 | IL_3UXR_012, IL_2QBG_082, IL_1S72_078, IL_2ZJR_078, IL_3U5H_100, IL_1S72_076, IL_3UXR_079, IL_3UXR_086, IL_4A1B_102 | IL_3V2F_085 |
- Annotations
-
- (8)
- Isolated tHS basepair with bulges (H) (3)
- Basepair signature
- 06_cWW-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.30 | Max 0.63
Coloring options: